View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5817-Insertion-10 (Length: 131)

Name: NF5817-Insertion-10
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5817-Insertion-10
NF5817-Insertion-10
[»] chr1 (4 HSPs)
chr1 (9-131)||(41430852-41430974)
chr1 (90-131)||(41425526-41425567)
chr1 (87-131)||(41452274-41452318)
chr1 (89-124)||(41440992-41441027)
[»] scaffold0274 (2 HSPs)
scaffold0274 (9-124)||(13956-14071)
scaffold0274 (87-131)||(18402-18446)
[»] chr7 (1 HSPs)
chr7 (41-131)||(7764094-7764183)
[»] chr2 (2 HSPs)
chr2 (38-131)||(33362111-33362203)
chr2 (88-124)||(33369185-33369221)
[»] scaffold0271 (1 HSPs)
scaffold0271 (87-114)||(4722-4749)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 5e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 41430852 - 41430974
Alignment:
Q  9 actggtacctttagaaataaggggctgtgagttccattttattttatctctgttttatagttgtttctgaaattcttatctttttctttacaaacaaata 108  Q
    |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41430852 actggtacctttagtaataaggggctataagttccattttattttatctctgttttatagttgtttctgaaattcttatctttttctttacaaacaaata 41430951  T
Q  109 atcattgtttgttactcttgtag 131  Q
    |||||||||||||||| ||||||    
T  41430952 atcattgtttgttacttttgtag 41430974  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 41425526 - 41425567
Alignment:
Q  90 ttttctttacaaacaaataatcattgtttgttactcttgtag 131  Q
    |||||||||||||||||| |||||| ||||||||| ||||||    
T  41425526 ttttctttacaaacaaatgatcattatttgttacttttgtag 41425567  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 41452274 - 41452318
Alignment:
Q  87 tctttttctttacaaacaaataatcattgtttgttactcttgtag 131  Q
    |||||||  |||| |||||||||||||||||||||||| ||||||    
T  41452274 tcttttttcttaccaacaaataatcattgtttgttacttttgtag 41452318  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 41440992 - 41441027
Alignment:
Q  89 tttttctttacaaacaaataatcattgtttgttact 124  Q
    ||||||| ||| ||||||||||||||||||||||||    
T  41440992 tttttctgtaccaacaaataatcattgtttgttact 41441027  T

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Target: scaffold0274 (Bit Score: 104; Significance: 3e-52; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 14071 - 13956
Alignment:
Q  9 actggtacctttagaaataaggggctgtgagttccattttattttatctctgttttatagttgtttctgaaattcttatctttttctttacaaacaaata 108  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14071 actggtacctttagaaataaggggctgtaagtttcattttattttaactctgttttatagttgtttctgaaattcttatctttttctttacaaacaaata 13972  T
Q  109 atcattgtttgttact 124  Q
    ||||||||||||||||    
T  13971 atcattgtttgttact 13956  T

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Target: scaffold0274; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 18446 - 18402
Alignment:
Q  87 tctttttctttacaaacaaataatcattgtttgttactcttgtag 131  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  18446 tctttttctttacaaacaaataatcattatttgttacttttgtag 18402  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 7764183 - 7764094
Alignment:
Q  41 tccattttattttatctctgttttatagttgtttctgaaattcttatctttttctttacaaacaaataatcattgtttgttactcttgtag 131  Q
    ||||||||||||||||| |||||||||   |||||| ||| |||  ||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  7764183 tccattttattttatctatgttttataaacgtttctaaaagtctg-tctttttctttaccaacaagtaatcgttgtttgttacttttgtag 7764094  T

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Target: chr2 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 33362111 - 33362203
Alignment:
Q  38 agttccattttattttatctctgttttatagttgtttctgaaattcttatctttttctttacaaacaaataatcattgtttgttactcttgtag 131  Q
    |||||||||||||||||||| ||||||| |  | ||| ||||| ||| || ||||||||||| ||||||||||| ||||||||| || ||||||    
T  33362111 agttccattttattttatctatgttttaaaaatatttttgaaagtct-atgtttttctttaccaacaaataatctttgtttgtttctgttgtag 33362203  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 33369185 - 33369221
Alignment:
Q  88 ctttttctttacaaacaaataatcattgtttgttact 124  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  33369185 ctttttctctaccaacaaataatcattgtttgttact 33369221  T

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Target: scaffold0271 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 114
Target Start/End: Complemental strand, 4749 - 4722
Alignment:
Q  87 tctttttctttacaaacaaataatcatt 114  Q
    ||||||||||||||||||||||||||||    
T  4749 tctttttctttacaaacaaataatcatt 4722  T

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