View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817-Insertion-2 (Length: 972)
Name: NF5817-Insertion-2
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-2 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 796; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 796; E-Value: 0
Query Start/End: Original strand, 8 - 972
Target Start/End: Original strand, 2757104 - 2758050
Alignment:
| Q |
8 |
aataattgctaactcaagtctcaaagtatgatttcaaacattccaatcagcagtcaattaaccataatcacagtcctcataaactttatacactaaagca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757104 |
aataattgctaactcaagtctcaaagtatgatttcaaatattccaatcagcaatcaattaaccataatcacagtcctcataaactttatacactaaagca |
2757203 |
T |
|
| Q |
108 |
ggtggtgtttctctaaattttgaaatacatctaaacaacattatcaaacatgaaatcagtcatgaatcactaaggtctttcttaaggttgtaatgtgggt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757204 |
ggtggtgtttctctaaattttgaaatacatctaaacaacattatcaaacatgaaatcagtcatgaatcactaaggtctttcttaaggttgtaatgtgggt |
2757303 |
T |
|
| Q |
208 |
tggactacaattattatttttattcaaaatgccttaataacaagagatcatttattttccatgtacaaccatttacatcaatttactctccttttcttta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757304 |
tggactacaattattatttttattcaaaatgccttaataacaagagatcatttattttccatgtacaaccatttacatcaatttactctccttttcttta |
2757403 |
T |
|
| Q |
308 |
ccattaacaactcatttttggtgaatatcttgttatgttatatacttgacaacttttttcttttcctttctattgagcaagtgactcaaaattagtgtgt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757404 |
ccattaacaactcatttttggtgaatatcttgttatgttatatacttgacaacttttttcttttcctttctattgagcaagtgactcaaaattagtgtgt |
2757503 |
T |
|
| Q |
408 |
gttggaagtttgaaatcgtggcacgattttgagacagtatgtgggtgtatttctggaacacgatttggaaaatcacatgacacgatttttggataagggt |
507 |
Q |
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| T |
2757504 |
gttggaagtttgaaatcgtggcacgattttgagacagtatatgggtgtttttctggaatacgatttgggaaatcacatgacacgatttttggataagggt |
2757603 |
T |
|
| Q |
508 |
gtagcttggataagggtgtagcacatacaaactttatcgtgacgcgatttaggcaaatcgtgacaaagaaatggaataaaagtatagatcaactttatca |
607 |
Q |
| |
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| T |
2757604 |
gtagc-----------tgtagcacatacaaactttatcgtggcgcgatttaggcaaattgtgacaaagaaatagaataaaagtatagatcaactttatca |
2757692 |
T |
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| Q |
608 |
cttacagattacaacttacaagtatagagtaatcattcaacaaagaaatagaataatttaggattgataaactttatcacttagagattaaaacttacaa |
707 |
Q |
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| T |
2757693 |
cttacagattacaacttacaagtatagagtaatcattcaacaaagaaatagaataatttaggattgataaactttatcacttacagattacaacttacaa |
2757792 |
T |
|
| Q |
708 |
gtattgttaataaaccaccccactccctccaaaaaagtaaatttgaaccaaaatactttataatgttatcagtcctttgaatctattgacccttctcaat |
807 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
2757793 |
gtattgttagtaaaccaccccactccccccaaaaaagtaaatttaaaccaaaatactttataatgttatcagtcc-ttgaatctattgaccc-tctcaat |
2757890 |
T |
|
| Q |
808 |
cagattattcatagtaatagcaaatgcatcctgaaacttatcaaacttcagcattgtgatcaccatatactaaaccaggcaataatttcatatacaataa |
907 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
2757891 |
cagattattcatagcaatagcaaatgcatcctgaaacttatcaaac-tcagcattgtgatcaccatatactaaaccaggcaataa-ttcatatacaat-a |
2757987 |
T |
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| Q |
908 |
tatctcctcatatttttctcctatctctcaatg-aatattcccaagcctctccacccacattcaca |
972 |
Q |
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|||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
2757988 |
tatctcctcata-ttttct-ctatctctcaatgaaatattcccaagcctctcca-ccacattcaca |
2758050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 805 - 960
Target Start/End: Original strand, 2753927 - 2754078
Alignment:
| Q |
805 |
aatcagattattcatagtaatagcaaatgcatcctgaaacttatcaaacttcagcattgtgatcaccatatactaaaccaggcaataatttcatatacaa |
904 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2753927 |
aatcagattgttcatagtaatagcaaatgcatcctgaaacttatcaaac-tcagcattgtgatcaccatatactaaaccaggcaataa-ttcatatacaa |
2754024 |
T |
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| Q |
905 |
taatatctcctcatatttttctcctatctctcaatg-aatattcccaagcctctcca |
960 |
Q |
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| T |
2754025 |
t-atatctcctcatatttt--ccctatctctcaatgaaatattcccaagcctctcca |
2754078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 39805369 - 39805329
Alignment:
| Q |
164 |
cagtcatgaatcactaaggtctttcttaaggttgtaatgtg |
204 |
Q |
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| T |
39805369 |
cagtcatgaatcactaaggtctttattatggttgtaatgtg |
39805329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 491213 - 491128
Alignment:
| Q |
380 |
ttgagcaagtgactcaaaattagtgtgtgttggaagtttgaaatcgtggcacgattttgagacagtatgtgggtgtatttctggaa |
465 |
Q |
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| T |
491213 |
ttgagcatgtgagtcaaaattagtgtgtgttggaagtttgaaatcatgacacgattttgaggctggatgtgagtgtgtttctggaa |
491128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 42262378 - 42262293
Alignment:
| Q |
380 |
ttgagcaagtgactcaaaattagtgtgtgttggaagtttgaaatcgtggcacgattttgagacagtatgtgggtgtatttctggaa |
465 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||| | | ||||| |||| ||||||||| |
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| T |
42262378 |
ttgagcatgtgagtcaaaattagtgtgtgttggaagtttgaaatcatgacacgattttgaggctggatgtgagtgtgtttctggaa |
42262293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 24397548 - 24397597
Alignment:
| Q |
389 |
tgactcaaaattagtgtgtgttggaagtttgaaatcgtggcacgattttg |
438 |
Q |
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| T |
24397548 |
tgactcaaaattcgtgtgtgctggaagtctgaaatcgtcacacgattttg |
24397597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 36575083 - 36575026
Alignment:
| Q |
380 |
ttgagcaagtgactcaaaattagtgtgtgttggaagtttgaaatcgtggcacgattttga |
439 |
Q |
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| T |
36575083 |
ttgagcaagtgactcaaaattagtgtgt--tggaagtttgaaatcgtcacacgattttga |
36575026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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