View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5817-Insertion-3 (Length: 622)
Name: NF5817-Insertion-3
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 461
Target Start/End: Original strand, 1754787 - 1755246
Alignment:
| Q |
9 |
gtcttatataatgtgtttggtaacaaatatcccaagataagtgaccacgaattttggaatagttgttactaa-tcaattaataattattgctcactgctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| || |
|
|
| T |
1754787 |
gtcttatataatgtgtttggtaacaaatatcacaagataagtgaccacgaattttggaatagttgttattaaatcaattaataattattgcgca------ |
1754880 |
T |
|
| Q |
108 |
attgacttgatttgggttgggttgtataaaaaagtattatttgatacttattttttccccctataaaaaagtctaatttgnnnnnnnaaaggttgttctt |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1754881 |
-tcgacttgatttgggttgggttgtataaaaaaatattatttgatacttatttttttcccctataaaaaagtctaatttgtttttttaaaggttgttctt |
1754979 |
T |
|
| Q |
208 |
agtatcttttatttgaatatgtttttagatttatgtagatcatggttttnnnnnnncaaac----------agatacaatactctttaaaatgnnnnnnn |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
1754980 |
agtatcttttatttgaatatgtttttagatttatgtagatcatggttttaaaaaaacaaactataacaaatagatacaatactctttaaaatgttttttt |
1755079 |
T |
|
| Q |
298 |
n---aaagtaaaattagggaatctttctatgtggctgtcacctattgtgtttcattttttagattattgcttttccgggaaagaaagtaacattttataa |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
1755080 |
ttttaaagtaaaattagggaatctttctatgtggctgtcacctattgtgtttcattttttagattattgctattccgggaaggaaagtaacattttataa |
1755179 |
T |
|
| Q |
395 |
tgatgtttatgatttctctttttctgcaggtgctgctcataattcaatcagggttgctcaggtgtat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1755180 |
tgatgtttatgatttctctttttctgcaggtgctgctcataattcaatcagggttgctcaggtgtat |
1755246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 480 - 622
Target Start/End: Complemental strand, 18705738 - 18705596
Alignment:
| Q |
480 |
aatccattagacaacaatcctgagaacaattgtctgccgtcttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaaccactcgtc |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18705738 |
aatccattagacaacaatcctgagaacaattgtctgccatgttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaatcactcgtc |
18705639 |
T |
|
| Q |
580 |
ttcttgactgcgtagcctggccagcttgttggtgacaacaaca |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18705638 |
ttcttgactgcgtagcctggccagcttgttggtgacaacaaca |
18705596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 480 - 622
Target Start/End: Original strand, 1755379 - 1755521
Alignment:
| Q |
480 |
aatccattagacaacaatcctgagaacaattgtctgccgtcttcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaaccactcgtc |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1755379 |
aatccattagacaacaatcctgagaacaattgtctgccatattcataccataaacaacaaaagcaaaaatgatttgacattgcaaaagcaatcactcgtc |
1755478 |
T |
|
| Q |
580 |
ttcttgactgcgtagcctggccagcttgttggtgacaacaaca |
622 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1755479 |
ttcttgactgcgtagcctggccaacttgttggtgacaacaaca |
1755521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 337 - 462
Target Start/End: Complemental strand, 26946625 - 26946500
Alignment:
| Q |
337 |
tattgtgtttcattttttagattattgcttttccgggaaagaaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctgctcataa |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26946625 |
tattgtgtttcattttttagattattgcttttccgggaaggaaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctactcataa |
26946526 |
T |
|
| Q |
437 |
ttcaatcagggttgctcaggtgtatg |
462 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
26946525 |
ttcaatcaggtttgctcaggtgtatg |
26946500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 337 - 462
Target Start/End: Original strand, 594736 - 594862
Alignment:
| Q |
337 |
tattgtgtttcattttttagattattgcttttccgggaaagaaagtaacattttataatgatgtttatgatttctctttttctgca-ggtgctgctcata |
435 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||| | |||||| |||| | |
|
|
| T |
594736 |
tattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacattttataatgatgttgatcatttttcttttttttattggtgctactcaca |
594835 |
T |
|
| Q |
436 |
attcaatcagggttgctcaggtgtatg |
462 |
Q |
| |
|
||||||||||| |||||| ||||||| |
|
|
| T |
594836 |
attcaatcaggattgctcgtgtgtatg |
594862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 457
Target Start/End: Complemental strand, 28169966 - 28169850
Alignment:
| Q |
339 |
ttgtgtttcattttttagattattgcttttccgggaaagaaagtaacattttataatgatgtttatgatttctctttttctgcaggtgctgctcataatt |
438 |
Q |
| |
|
|||||||| | ||| |||||||||| |||||||||| |||||||||||||| | | ||||||||||||| |||||| | |||| ||| |||| |||| |
|
|
| T |
28169966 |
ttgtgttttaatttatagattattgtgtttccgggaaggaaagtaacattttttttttatgtttatgatttttctttt--ttcaggagctactcagaatt |
28169869 |
T |
|
| Q |
439 |
caatcagggttgctcaggt |
457 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28169868 |
caatcagggttgctcaggt |
28169850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 22475885 - 22475928
Alignment:
| Q |
414 |
ttttctgcaggtgctgctcataattcaatcagggttgctcaggt |
457 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
22475885 |
ttttttgcaggtgctactcagaattcaatcagggttgctcaggt |
22475928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University