View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5817-Insertion-4 (Length: 588)
Name: NF5817-Insertion-4
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 231 - 544
Target Start/End: Original strand, 42334482 - 42334804
Alignment:
| Q |
231 |
tggtttgaacttttgattaatacaccgatcagtcataagcttgaacactaattaatgggcctaggcagaaatcccaatgtattcttttgaacttctgtct |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42334482 |
tggtttgaacttttgattaatacaccgatcaatcatatgcttgaatactaattaatgggcctaggcagaaatcccaatgtattcttttgaacttctgtct |
42334581 |
T |
|
| Q |
331 |
tagtacatttacatgcatattatatgtatatg---------aatgatatgaaaaatcaagactgttaccttaaaactaaaaaaggaaataaagacatgaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42334582 |
tagtacatttacatgcatattatatgtatatgtatatgatgaatgatatgaaaaatcaagactgttaccttaaaactaaaaaaggaaataaagatatgaa |
42334681 |
T |
|
| Q |
422 |
agtatcacaagctaagcataagcatgttgtaatttatcgtagaaaaagaagaagcttgttgtgattgaataatgaacgaaataaagacagacacaacgtc |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42334682 |
agtatcacaagctaagcataagcatgttgtaatttatcgtagaaaaagaagaagcttgttgtgattgaataatgaacaaaataaagacagacacaacgtc |
42334781 |
T |
|
| Q |
522 |
aaatataactaattaactaacag |
544 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42334782 |
aaatataactaattaactaacag |
42334804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 42334270 - 42334457
Alignment:
| Q |
11 |
aactagtttcataccaataaaagtcattcaggagcacgtttacatggaggaggcgatttgatttggttccaactagacccaatagaacggaaagaagtcc |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42334270 |
aactagtttcataccgataaaagtcattcaggagcacgtttacatggaggaggcgatttgatttggttccaactagacccaatagaacggaaagaagtcc |
42334369 |
T |
|
| Q |
111 |
cacatcatgccataaagttaagaaatagatttatataactgttgaggattagagtagaattagttcgacgtttccgttaaatatgtaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42334370 |
cacatcatgccataaagttaagaaatagatttatataactattgaggattagagtagaattagttcgacgtttccgttaaatatgtaa |
42334457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 535 - 588
Target Start/End: Original strand, 42334819 - 42334869
Alignment:
| Q |
535 |
taactaacagctaacaagttgtaacaccacctccctcaagatagaatgtggata |
588 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42334819 |
taactaacagctaacaagttgtaa---cacctccctcaagatagaatgtggata |
42334869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University