View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817-Insertion-5 (Length: 576)
Name: NF5817-Insertion-5
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 202 - 548
Target Start/End: Complemental strand, 42037940 - 42037599
Alignment:
| Q |
202 |
ggtacccctggggctcaggctgctattttctgtttgttttgtagcactcttgcacaacctctttattttgttaatatatttatctttgccatnnnnnnnt |
301 |
Q |
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| T |
42037940 |
ggtacccctggggctcaggctgctactttctgtttgttttgtagcactcttgcacaacctctttattttgttaatatatttatctttgccataaaaaaat |
42037841 |
T |
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| Q |
302 |
agtaaagtatgaacatgatgcaccttaagaaattgtaaatacttatgcttattatattatcaatactgatgtgtannnnnnnnaatggcaaacaaagaaa |
401 |
Q |
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| T |
42037840 |
agtaaagtatgaacatgatgcaccttaagaaattgtaaatacttatgcttattatattatcaatactgatgtgtattttttttaatggcaaacaaagaaa |
42037741 |
T |
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| Q |
402 |
tattattgaaaattggaagagaaaagtacaagagttaacaaaactcttaaaacccgtgagtgaatannnnnnnnnnctcttgcttaatttactctttttg |
501 |
Q |
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| T |
42037740 |
tattattgaaaattggaggagaaaagtacaagagttaacaaaactcttaaaacccgtgagtgatt-----ttttctttctttcttaatttactctttttg |
42037646 |
T |
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| Q |
502 |
aggtgtttctctttgcaatgatgttggtttatgatgcagattccttg |
548 |
Q |
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| T |
42037645 |
aggtgtttctctttgcaatgatgttggtttatgatgcagattccttg |
42037599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 42038133 - 42038009
Alignment:
| Q |
9 |
cttgggtggtttgtcttccaattctcgacagcccattaggtttggtccctctccctgttcccctagggaatgggcaacttccgacgagtagtctggtttt |
108 |
Q |
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| T |
42038133 |
cttgggtggtttgtcttccaatcctcgacagcccattaggtttggtccctctccctgttcccctagggaatgggcaacttccgacgggtagtctggtttt |
42038034 |
T |
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| Q |
109 |
ggaggttattctcaggtttttggga |
133 |
Q |
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| T |
42038033 |
gtaggttattctcaggtttttggga |
42038009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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