View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817-Insertion-6 (Length: 512)
Name: NF5817-Insertion-6
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Original strand, 47080669 - 47081161
Alignment:
| Q |
9 |
tacagtacatgttagaaagggtattattgggaaatgtactcattattgataccttcattccctatcacaattggtctatttcaatctttaatgcttcctt |
108 |
Q |
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| T |
47080669 |
tacagtacatgttagaaagggtattattgggaattgtactcattattgatacattcattccctatcacaattggtctatttcaatctttaatgcttcctt |
47080768 |
T |
|
| Q |
109 |
aaattatgctattgtagctgtagcttcagagcaacaacacaacccatgattctaacttttttccactactcttttatttacctcttttgtataaattgag |
208 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||| | || || || | ||||||||| |
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| T |
47080769 |
aaattatgctattgtagctgtaacttcagagaaacaacacaacccatgattctaacttttttttac----cttttttccactactcttttgtaaattgag |
47080864 |
T |
|
| Q |
209 |
tagtaccatatcagcctttctttattaattactacatttaactaaccatgtttaattgaactgattacattacaggcttttacagatcagcatctggatt |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47080865 |
tagtaccatatcaccctttctttattaattactacatttaactaaccatgtttaattgaactcattacattacaggcttttacagatcagcatctggatt |
47080964 |
T |
|
| Q |
309 |
tatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagcatttgtgatagaccctccatcactttttgcatac |
408 |
Q |
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| T |
47080965 |
tatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagcatttgtgatagaccctccatcactttttgcatac |
47081064 |
T |
|
| Q |
409 |
ttgtggaaggtaaataaacacaattcaaaatctatttctagtactgtttagccactgccagttaaactccaataacaacactatttgctgtcttgtt |
505 |
Q |
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| T |
47081065 |
ttgtggaaggtaaataaacacaattcaaaatctatttctagtactgtttagccactgccagttaaaatccaataacaacactatttgctgtcttgtt |
47081161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 3761845 - 3761742
Alignment:
| Q |
276 |
cattacaggcttttacagatcagcatctggatttatgaacttgttgttgggagcattgaaaattgtgggtgagtactatccaggacggttaagcaaagca |
375 |
Q |
| |
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||||||| ||||||||| ||||||||||| |||||||||| | || | |||||| ||||||||||||| | |||||| ||| || | |||||||||| |
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| T |
3761845 |
cattacatgcttttacatatcagcatctgaatttatgaacctattatcaggagcaccgaaaattgtgggtcaatactattcagaacagctaagcaaagcg |
3761746 |
T |
|
| Q |
376 |
tttg |
379 |
Q |
| |
|
|||| |
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|
| T |
3761745 |
tttg |
3761742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 438
Target Start/End: Original strand, 7516234 - 7516264
Alignment:
| Q |
408 |
cttgtggaaggtaaataaacacaattcaaaa |
438 |
Q |
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| T |
7516234 |
cttgtggaaggtaaataaacacaattcaaaa |
7516264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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