View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817-Insertion-7 (Length: 490)
Name: NF5817-Insertion-7
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Complemental strand, 2935466 - 2934986
Alignment:
| Q |
9 |
gctcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcat |
108 |
Q |
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| T |
2935466 |
gctcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcat |
2935367 |
T |
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| Q |
109 |
caccctgtgaaatggcgaatgcagcctcccgtttgaccatgcctacaaaaatttacatgagaaatgaaaattttcaatataattcaacaaatgccagaat |
208 |
Q |
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| T |
2935366 |
caccctgtgaaatggcgaatgcaacctcccgtttgaccatgcctacaaaa-tttacatgagaaatgaaaattttcaatataattcaacaagtgccagaat |
2935268 |
T |
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| Q |
209 |
aata---tcgtttttaaaatgcacgtgaccacggtctgtgctgctccatccgagatttttatgtcttcgacaacattactacgaatgttgttacataagt |
305 |
Q |
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| T |
2935267 |
aataaaattgtttttaaaatgcacgtgaccacggtctgggctgcgccatccgagatttttatgtcttcgacaacattactacgaatgttgttacatcagt |
2935168 |
T |
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| Q |
306 |
tgtatttaactttaactaattgtagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagttattattaatgaggaat |
405 |
Q |
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| T |
2935167 |
tgtatttaactttaactaattggagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagtt---attaatgaggaat |
2935071 |
T |
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| Q |
406 |
agtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatc |
490 |
Q |
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| T |
2935070 |
actgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatc |
2934986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 2920616 - 2920469
Alignment:
| Q |
11 |
tcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcatca |
110 |
Q |
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| T |
2920616 |
tcctcatccacaagctcctccggagcttttataatgtaccctcctttcgggatagagaacagcccggttgaatatcgtgcctcgttcccactcatcatca |
2920517 |
T |
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| Q |
111 |
ccctgtgaaatggcgaatgcagcctcccgtttgaccatgcctacaaaa |
158 |
Q |
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| T |
2920516 |
cccgatgaaacggcgaatgcagcctcccgtttgaccatgcctgcaaaa |
2920469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 490
Target Start/End: Complemental strand, 2920262 - 2920169
Alignment:
| Q |
400 |
aggaatagtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcct---gaagaaggcttgtagcttatccattgtccatc |
490 |
Q |
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| T |
2920262 |
aggaatggttaatggaatttacatgaatagagtcaccaatcatagctacaaaactgcctgaagaagaaggcttgtagcttatccattgtccatc |
2920169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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