View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817_high_1 (Length: 617)
Name: NF5817_high_1
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Complemental strand, 2935466 - 2934874
Alignment:
| Q |
20 |
gctcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcat |
119 |
Q |
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| T |
2935466 |
gctcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcat |
2935367 |
T |
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| Q |
120 |
caccctgtgaaatggcgaatgcagcctcccgtttgaccatgcctacaaaaatttacatgagaaatgaaaattttcaatataattcaacaaatgccagaat |
219 |
Q |
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| T |
2935366 |
caccctgtgaaatggcgaatgcaacctcccgtttgaccatgcctacaaaa-tttacatgagaaatgaaaattttcaatataattcaacaagtgccagaat |
2935268 |
T |
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| Q |
220 |
aata---ttgtttttaaaatgcacgtgaccacggtctgggctgcaccatccgagatttttatgtcttcgacaacattactacgaatgttgttacataagt |
316 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2935267 |
aataaaattgtttttaaaatgcacgtgaccacggtctgggctgcgccatccgagatttttatgtcttcgacaacattactacgaatgttgttacatcagt |
2935168 |
T |
|
| Q |
317 |
tgtatttaactttaactaattgtagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagttattattaatgaggaat |
416 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2935167 |
tgtatttaactttaactaattggagtattaaggatcacgatgcgatgatttaaaacattattagttaccaattgatgattagttatta---atgaggaat |
2935071 |
T |
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| Q |
417 |
agtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatctttggtcatcatctc |
516 |
Q |
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| T |
2935070 |
actgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaaggcttgtagcttatccattgtccatctttggtcatcatctc |
2934971 |
T |
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| Q |
517 |
taaaccttccacttgattttggtacaatatggtcacaaagttcttgtcagtgtgtggggtgagacctacttttgtatcacttgtttgaggccctttg |
613 |
Q |
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| T |
2934970 |
taaaccttccacttgattttggtacaatatggtcacaaagttcttgtcagtgtgtggggtgagacctacttttgtatcacttgtttgagggcctttg |
2934874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 411 - 613
Target Start/End: Complemental strand, 2920262 - 2920057
Alignment:
| Q |
411 |
aggaatagtgaatgaaatttacatgaatagaatcaccaagcacaactacaaaacttcctgaagaag---gcttgtagcttatccattgtccatctttggt |
507 |
Q |
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| T |
2920262 |
aggaatggttaatggaatttacatgaatagagtcaccaatcatagctacaaaactgcctgaagaagaaggcttgtagcttatccattgtccatctttggt |
2920163 |
T |
|
| Q |
508 |
catcatctctaaaccttccacttgattttggtacaatatggtcacaaagttcttgtcagtgtgtggggtgagacctacttttgtatcacttgtttgaggc |
607 |
Q |
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| T |
2920162 |
catcacctctaaaccctccacttgattttggtacaatatggtcacaacattcttgtcactgtgtgtgctgaggcctaattttgtgtcacttgtttgaggg |
2920063 |
T |
|
| Q |
608 |
cctttg |
613 |
Q |
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|||||| |
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| T |
2920062 |
cctttg |
2920057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 2920616 - 2920469
Alignment:
| Q |
22 |
tcctcgtccaccagctcctccggagcttttataatgtaccctcctttgggggtagagaacaaccctgctgaatatcttgcctcattcccactcatcatca |
121 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| | |||||||| |||||| |||||||||||||||| |
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| T |
2920616 |
tcctcatccacaagctcctccggagcttttataatgtaccctcctttcgggatagagaacagcccggttgaatatcgtgcctcgttcccactcatcatca |
2920517 |
T |
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| Q |
122 |
ccctgtgaaatggcgaatgcagcctcccgtttgaccatgcctacaaaa |
169 |
Q |
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| T |
2920516 |
cccgatgaaacggcgaatgcagcctcccgtttgaccatgcctgcaaaa |
2920469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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