View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817_high_7 (Length: 310)
Name: NF5817_high_7
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 42037615 - 42037919
Alignment:
| Q |
1 |
taaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagagnnnnnnnnnntattcactcacgggttttaagagttttgttaactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
42037615 |
taaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagaaagaaaa-----aatcactcacgggttttaagagttttgttaactc |
42037709 |
T |
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| Q |
101 |
ttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnnntacacatcagtattgataatataataagcataagtatttacaat |
200 |
Q |
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| T |
42037710 |
ttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagtattgataatataataagcataagtatttacaat |
42037809 |
T |
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| Q |
201 |
ttcttaaggtgcatcatgttcatactttactannnnnnnatggcaaagataaatatattaacaaaataaagaggttgtgcaagagagctacaaaacaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42037810 |
ttcttaaggtgcatcatgttcatactttactatttttttatggcaaagataaatatattaacaaaataaagaggttgtgcaagagtgctacaaaacaaac |
42037909 |
T |
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| Q |
301 |
agaaaatagc |
310 |
Q |
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||||| |||| |
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| T |
42037910 |
agaaagtagc |
42037919 |
T |
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