View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817_low_2 (Length: 553)
Name: NF5817_low_2
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817_low_2 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Original strand, 45845210 - 45845737
Alignment:
| Q |
18 |
aaacatcacttgtttttgttgcttctccaattccagttaatttcttagctcttagtgcttcacaatcccaatctgtttgactcaaaacaaccaacatagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845210 |
aaacatcacttgtttttgttgcttctccaattccagttaatttcttagctcttagtgcttcacaatcccaatctgtttgactcaaaacaaccaacatagt |
45845309 |
T |
|
| Q |
118 |
cacagcacaagttccctgagccacaagcaacccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845310 |
cacagcacaagttccctgagccacaagcaacccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaaca |
45845409 |
T |
|
| Q |
218 |
atgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845410 |
atgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcac |
45845509 |
T |
|
| Q |
318 |
atagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845510 |
atagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaac |
45845609 |
T |
|
| Q |
418 |
caaagcaaacacacctaaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactcta |
517 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845610 |
caaagcaaacacacctaaaatgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactcta |
45845709 |
T |
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| Q |
518 |
gtggaaacactaaaacttattgatgatg |
545 |
Q |
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| T |
45845710 |
gtggaaacactaaaacttattgatgatg |
45845737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 103 - 529
Target Start/End: Complemental strand, 24822 - 24396
Alignment:
| Q |
103 |
aacaaccaacatagtcacagcacaagttccctgagccacaagcaacccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgcc |
202 |
Q |
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||||| ||||||||| | |||||| | ||||||||| |||| || |||| ||| | ||||||||||||| | ||| ||||||| |||||||||| | |
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| T |
24822 |
aacaatcaacatagtaagagcacatgatccctgagcagcaagtaaaccaagccaaagaccttgaaaatcataaccaccataaaatgctaaccaaaccgaa |
24723 |
T |
|
| Q |
203 |
actggcattccaacaatgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggac |
302 |
Q |
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| T |
24722 |
accggcattccgacgagataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctgttgtttgaggac |
24623 |
T |
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| Q |
303 |
aatttccaagttcacatagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaac |
402 |
Q |
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| || || |||||||||| ||||| | || || || | ||||| | || || |||||||||| |||||||| |||||||| |||||||| || |
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| T |
24622 |
agttacctagttcacataaacctataattggcaaaaccattgatgttaaagcaatgatttctttgtcttttgtgaacatactagcccacatgtttcttac |
24523 |
T |
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| Q |
403 |
cattacagcaaaaaccaaagcaaacacacctaaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagt |
502 |
Q |
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| T |
24522 |
acaaagagtgaaaataaatgcaaacactccacaaatgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatc |
24423 |
T |
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| Q |
503 |
ttgttaccaactctagtggaaacacta |
529 |
Q |
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||||||||||||| || ||||||||| |
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| T |
24422 |
atgttaccaactcttgttgaaacacta |
24396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 2990912 - 2990734
Alignment:
| Q |
149 |
ccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaacaatgtaaaaacaaccaaaattgatatttgcac |
248 |
Q |
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|||| ||||||||||| |||||||| ||| || | ||| ||||||| ||| || |||||||| |||| ||||||||||| ||||| |||||||| | |
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| T |
2990912 |
ccaaaccacaaacctttgaaatcaaatccagcaaagaaactcaaccaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgc |
2990813 |
T |
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| Q |
249 |
ctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccctat |
327 |
Q |
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||| ||| ||||| || ||||| || || || |||||| | ||||||||||||||||||||||| |||||||| ||||| |
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| T |
2990812 |
ctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctat |
2990734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 534
Target Start/End: Complemental strand, 2990611 - 2990527
Alignment:
| Q |
450 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaact |
534 |
Q |
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|||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| |||||| |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaact |
2990527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 51875421 - 51875330
Alignment:
| Q |
233 |
aaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccc |
324 |
Q |
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|||||||||||||||||||| |||| || || | |||||||| || |||||||| ||||||||||| ||||| |||| ||||| ||||| |
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| T |
51875421 |
aaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaaagccc |
51875330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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