View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817_low_3 (Length: 475)
Name: NF5817_low_3
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 47081107 - 47080669
Alignment:
| Q |
14 |
tactagaaatagattttgaattgtgtttatttaccttccacaagtatgcaaaaagtgatggagggtctatcacaaatgctttgcttaaccgtcctggata |
113 |
Q |
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| T |
47081107 |
tactagaaatagattttgaattgtgtttatttaccttccacaagtatgcaaaaagtgatggagggtctatcacaaatgctttgcttaaccgtcctggata |
47081008 |
T |
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| Q |
114 |
gtactcacccacaattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgtaatgtaatcagttcaattaaacatggtt |
213 |
Q |
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| T |
47081007 |
gtactcacccacaattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgtaatgtaatgagttcaattaaacatggtt |
47080908 |
T |
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| Q |
214 |
agttaaatgtagtaattaataaagaaaggctgatatggtactactcaatttatacaaaagaggtaaataaaagagtagtggaaaaaagttagaatcatgg |
313 |
Q |
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| T |
47080907 |
agttaaatgtagtaattaataaagaaagggtgatatggtactactcaatttacaaaagagtagtggaaaaaag----gtaaaaaaaagttagaatcatgg |
47080812 |
T |
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| Q |
314 |
gttgtgttgttgctctgaagctacagctacaatagcataatttaaggaagcattaaagattgaaatagaccaattgtgatagggaatgaaggtatcaata |
413 |
Q |
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| T |
47080811 |
gttgtgttgtttctctgaagttacagctacaatagcataatttaaggaagcattaaagattgaaatagaccaattgtgatagggaatgaatgtatcaata |
47080712 |
T |
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| Q |
414 |
atgagtacaattcccaataataccctttctaacatgtactgta |
456 |
Q |
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| T |
47080711 |
atgagtacaattcccaataataccctttctaacatgtactgta |
47080669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 3761742 - 3761845
Alignment:
| Q |
86 |
caaatgctttgcttaaccgtcctggatagtactcacccacaattttcaatgctcccaacaacaagttcataaatccagatgctgatctgtaaaagcctgt |
185 |
Q |
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|||| |||||||||| | || ||| |||||| | ||||||||||||| |||||| | || | |||||||||| ||||||||||| ||||||||| ||| |
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| T |
3761742 |
caaacgctttgcttagctgttctgaatagtattgacccacaattttcggtgctcctgataataggttcataaattcagatgctgatatgtaaaagcatgt |
3761841 |
T |
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| Q |
186 |
aatg |
189 |
Q |
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|||| |
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| T |
3761842 |
aatg |
3761845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 7516264 - 7516234
Alignment:
| Q |
27 |
ttttgaattgtgtttatttaccttccacaag |
57 |
Q |
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| T |
7516264 |
ttttgaattgtgtttatttaccttccacaag |
7516234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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