View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817_low_4 (Length: 433)
Name: NF5817_low_4
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 34665279 - 34664959
Alignment:
| Q |
1 |
aagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttatagacttgtgactat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665279 |
aagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttgatacgactttctttgttacaatacaacctttttatagacttgtgactat |
34665180 |
T |
|
| Q |
101 |
gagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaacatttat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665179 |
gagaatgtagatagactcttacataagaatagagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaacatttat |
34665080 |
T |
|
| Q |
201 |
ccttctttattattatattattctagtactaattttgagttggtagaatttgattagatcagattttcgatgaatttggtattaattcaatttttgatat |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665079 |
gcttctttattattatattattcttgtactaattttgagttggtggaatttgataagatcagattttcgatgaatttggtattaattcaatttttgatat |
34664980 |
T |
|
| Q |
301 |
tctacaataaatattttgata |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34664979 |
tctacaataaatattttgata |
34664959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 34645585 - 34645297
Alignment:
| Q |
1 |
aagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttatagactt---gtgac |
97 |
Q |
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|||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34645585 |
aagaaagagttagaaaggatagtgtgttcattgttgccatcacaaatttcggtacgactttctttgttacaatacaacctttttatagactttaattgac |
34645486 |
T |
|
| Q |
98 |
tatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattat-------tcattcatcattcataaaggataaaaagaaaacggta |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||| |
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| T |
34645485 |
tatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgatcattcattcatcattcatcattcataatgggaaaaaagaaaacggta |
34645386 |
T |
|
| Q |
191 |
aaacatttatccttctttattattatattattctagtactaattttgagttggtagaatttgattagatcagattttcgat-gaatttggt |
280 |
Q |
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||| |||||| |||||||||||| |||||| |||||||||||| ||||||||| | ||||||| ||||||||||||| || ||||||||| |
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| T |
34645385 |
aaatatttatgcttctttattat--tattatactagtactaattctgagttggtgggatttgataagatcagattttcaatggaatttggt |
34645297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 34645255 - 34645211
Alignment:
| Q |
277 |
tggtattaattcaatttttgatattctacaataaatattttgata |
321 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34645255 |
tggtatcaattcaatttttgatattctacaataaatattttgata |
34645211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 34664547 - 34664467
Alignment:
| Q |
324 |
gtttgtttctgtaagctggttaactaagaatttaaatgtgtaaactaatgaaagtttggaacgtaaatcgcaatgaattta |
404 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| |||| |||||| ||| ||| || | |||| | ||||||||| |
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| T |
34664547 |
gtttgtttctttaagctggttaactaaaaatttaaatgtataaattaatgagagtatggtacatgaatctcgatgaattta |
34664467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 45644696 - 45644613
Alignment:
| Q |
111 |
atagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaac |
194 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45644696 |
atagactcttacataagaatgtggcctgaaaatttgtgattattcattcatcattcataatggataaaaagaaaatggtaaaac |
45644613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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