View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817_low_5 (Length: 419)
Name: NF5817_low_5
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 38398889 - 38398499
Alignment:
| Q |
10 |
aagaatatactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398889 |
aagaaaatactaagagcattgaaccgcagagtacttgaaattgctccatgttctgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacat |
38398790 |
T |
|
| Q |
110 |
caataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398789 |
caataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
38398690 |
T |
|
| Q |
210 |
taatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398689 |
taatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaa |
38398590 |
T |
|
| Q |
310 |
ttgaaaaatgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaac |
400 |
Q |
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| T |
38398589 |
ttgaaaaatgctgaaaatgtgaggtatcaagaagtttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaac |
38398499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 38381253 - 38380870
Alignment:
| Q |
17 |
tactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacatcaataac |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |
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| T |
38381253 |
tactaagagcattgaaccggagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacatctattaa |
38381154 |
T |
|
| Q |
117 |
atcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcct |
216 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38381153 |
atcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcct |
38381054 |
T |
|
| Q |
217 |
aagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaattgaaaa |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || | ||||||||| |||||||||||||||||||| ||| |
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| T |
38381053 |
aagatcaacctagttgtttaccgtcttattgctaaggaaaacatagaagaattggaggagttcatggtaattggtgatgaaatgttggaagaatttaaac |
38380954 |
T |
|
| Q |
317 |
atgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaac |
400 |
Q |
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|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380953 |
atgctgaaaatgtgaggtatcaagaagttttcactaagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaac |
38380870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 38390128 - 38389736
Alignment:
| Q |
17 |
tactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaaca-------- |
108 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
38390128 |
tactaagagcattgaaccgcagagtactcgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgccgaaaccaacactaacaac |
38390029 |
T |
|
| Q |
109 |
-tcaataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatg |
207 |
Q |
| |
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|||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38390028 |
atcaataacattagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgaatgatg |
38389929 |
T |
|
| Q |
208 |
aataatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaag |
307 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||| ||| | ||||||||| |||| ||||||| |||| ||||||||| |||||||||||||||| |
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| T |
38389928 |
aataatcctaggatcaacctagttgtttactgtcttgtttctaggaaaaacatagcagaagtggaggagttaatggtaattggtgatgaaatgttggaag |
38389829 |
T |
|
| Q |
308 |
aattgaaaaatgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaac |
400 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38389828 |
aattgaaacatgctgaaaatgtgaggtatcaagaagtttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaac |
38389736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 37841015 - 37841378
Alignment:
| Q |
17 |
tactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacatcaataac |
116 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| | |||||||||| |
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| T |
37841015 |
tactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaaca-------- |
37841106 |
T |
|
| Q |
117 |
atcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcct |
216 |
Q |
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||||||| ||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
37841107 |
-tcagaatattctaatactcgattagccatcatatatttaggcggaaatgacgatgatgaagaggtcttatgtttagcaaaaagagcaatgaataatcat |
37841205 |
T |
|
| Q |
217 |
aagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaattgaaaa |
316 |
Q |
| |
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| ||||||||| |||||||| ||||||||||||||||| ||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||| | |
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| T |
37841206 |
aggatcaacctggttgtttatcgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagac |
37841305 |
T |
|
| Q |
317 |
atgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttctacgtgagat |
389 |
Q |
| |
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||||||||||||||| |||| ||||| |||| ||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
37841306 |
atgctgaaaatgtgaagtatgaagaagttttcactgagaatggatcagaaacggcatcttttctacgtgagat |
37841378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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