View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5817_low_8 (Length: 273)

Name: NF5817_low_8
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5817_low_8
NF5817_low_8
[»] chr6 (1 HSPs)
chr6 (218-262)||(7412677-7412721)
[»] chr7 (5 HSPs)
chr7 (219-262)||(42877310-42877353)
chr7 (223-262)||(33952009-33952048)
chr7 (223-262)||(43744725-43744764)
chr7 (223-260)||(37971387-37971424)
chr7 (223-255)||(35582485-35582517)
[»] chr4 (6 HSPs)
chr4 (219-262)||(53894255-53894298)
chr4 (213-255)||(31582633-31582675)
chr4 (223-260)||(16024954-16024991)
chr4 (223-262)||(13753357-13753396)
chr4 (220-262)||(35420715-35420757)
chr4 (219-251)||(17933415-17933447)
[»] chr1 (5 HSPs)
chr1 (219-262)||(32817874-32817917)
chr1 (223-262)||(44753053-44753092)
chr1 (224-262)||(45907362-45907400)
chr1 (223-255)||(29945876-29945908)
chr1 (219-255)||(45047094-45047130)
[»] scaffold0137 (1 HSPs)
scaffold0137 (217-253)||(9772-9808)
[»] chr5 (3 HSPs)
chr5 (223-262)||(12724763-12724802)
chr5 (224-262)||(29359529-29359567)
chr5 (223-255)||(32075784-32075816)
[»] chr3 (6 HSPs)
chr3 (223-262)||(36401848-36401887)
chr3 (219-262)||(46623043-46623086)
chr3 (227-262)||(49165119-49165154)
chr3 (220-262)||(38978016-38978058)
chr3 (223-252)||(38342270-38342299)
chr3 (218-262)||(3903075-3903119)
[»] chr2 (3 HSPs)
chr2 (224-262)||(27640573-27640611)
chr2 (219-261)||(36874921-36874963)
chr2 (219-252)||(17475074-17475107)
[»] chr8 (1 HSPs)
chr8 (222-262)||(5345263-5345303)


Alignment Details
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 7412677 - 7412721
Alignment:
Q  218 ggagcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  7412677 ggagcattacttttcccaccctatgtctttcctcgcgcaccctat 7412721  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 42877353 - 42877310
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  42877353 gagcattacttttcccaccctatgcctttcctcgcgcgccctat 42877310  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 33952048 - 33952009
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  33952048 attacttttcccaccctatgcctttcctcgcgcgccctat 33952009  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 43744725 - 43744764
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  43744725 attacttttctcaccctaagcctttcctcgcgcgccctat 43744764  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 37971424 - 37971387
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccct 260  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  37971424 attacttttctcaccctatgtctttcctcgcgcgccct 37971387  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 35582485 - 35582517
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgc 255  Q
    ||||||||||||| |||||||||||||||||||    
T  35582485 attacttttctcatcctatgcctttcctcgcgc 35582517  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 53894298 - 53894255
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  53894298 gagcattacttttcccaccctatgcctttcctcgcgcgccctat 53894255  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 31582675 - 31582633
Alignment:
Q  213 aaataggagcattacttttctcaccctatgcctttcctcgcgc 255  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  31582675 aaataggagcattacttttcccaccctatgcctttccttgcgc 31582633  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 16024991 - 16024954
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccct 260  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  16024991 attacttttctcaccctatgcctttcctcgcgcgccct 16024954  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 13753396 - 13753357
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  13753396 attacttttcccaccctatgcctttcctcgcgcgccctat 13753357  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 35420715 - 35420757
Alignment:
Q  220 agcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||    
T  35420715 agcattacttttcccaccctatgtctttcctcgcgcgccctat 35420757  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 17933447 - 17933415
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctc 251  Q
    |||||||||||||| ||||||||||||||||||    
T  17933447 gagcattacttttcccaccctatgcctttcctc 17933415  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 32817917 - 32817874
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  32817917 gagcattacttttcccaccctatgcctttcctcgcgcgccctat 32817874  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 44753053 - 44753092
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  44753053 attacttttcccaccatatgcctttcctcgcgcaccctat 44753092  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 45907362 - 45907400
Alignment:
Q  224 ttacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  45907362 ttacttttcccaccctatgcctttcctcgcgcgccctat 45907400  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 29945876 - 29945908
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgc 255  Q
    |||||||||| ||||||||||||||||||||||    
T  29945876 attacttttcccaccctatgcctttcctcgcgc 29945908  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 45047130 - 45047094
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcgcgc 255  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  45047130 gagcattacttttcccaccctatgtctttcctcgcgc 45047094  T

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Target: scaffold0137 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 9808 - 9772
Alignment:
Q  217 aggagcattacttttctcaccctatgcctttcctcgc 253  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9808 aggagcattacttttcccaccctatgcctttcctcgc 9772  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 12724802 - 12724763
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  12724802 attacttttcccaccctatgcctttcctcgcgcgccctat 12724763  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 29359529 - 29359567
Alignment:
Q  224 ttacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  29359529 ttacttttcccaccctatgactttcctcgcgcaccctat 29359567  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 32075816 - 32075784
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgc 255  Q
    |||||||||| ||||||||||||||||||||||    
T  32075816 attacttttcccaccctatgcctttcctcgcgc 32075784  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 36401848 - 36401887
Alignment:
Q  223 attacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  36401848 attacttttctcaccttatgcctttcctcgcgcgccctat 36401887  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 46623086 - 46623043
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||    
T  46623086 gagcattatttttcccaccctatgtctttcctcgcgcaccctat 46623043  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 49165119 - 49165154
Alignment:
Q  227 cttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||||||||||||||||||||| ||||||    
T  49165119 cttttctcaccctatgcctttcctcgcgcgccctat 49165154  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 38978058 - 38978016
Alignment:
Q  220 agcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||||  |||||||||||||||||||||| ||||||    
T  38978058 agcattactttttccaccctatgcctttcctcgcgcgccctat 38978016  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 38342299 - 38342270
Alignment:
Q  223 attacttttctcaccctatgcctttcctcg 252  Q
    ||||||||||||||||||||||||||||||    
T  38342299 attacttttctcaccctatgcctttcctcg 38342270  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 3903119 - 3903075
Alignment:
Q  218 ggagcattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||||||  ||||||||||||||||||| || ||||||    
T  3903119 ggagcattactttttccaccctatgcctttcctcgtgcgccctat 3903075  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 27640611 - 27640573
Alignment:
Q  224 ttacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  27640611 ttacttttcccaccctatgcctttcctcgcgcgccctat 27640573  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 36874921 - 36874963
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcgcgcacccta 261  Q
    |||||||||||||| ||||||||| |||||||||||| |||||    
T  36874921 gagcattacttttcccaccctatgtctttcctcgcgcgcccta 36874963  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 17475107 - 17475074
Alignment:
Q  219 gagcattacttttctcaccctatgcctttcctcg 252  Q
    ||||||||||||||||| ||||||||||||||||    
T  17475107 gagcattacttttctcatcctatgcctttcctcg 17475074  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 5345303 - 5345263
Alignment:
Q  222 cattacttttctcaccctatgcctttcctcgcgcaccctat 262  Q
    ||||||||||| |||||||||||||||| ||||| ||||||    
T  5345303 cattacttttcccaccctatgcctttccccgcgcgccctat 5345263  T

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