View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5818-Insertion-1 (Length: 1145)
Name: NF5818-Insertion-1
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5818-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 635 - 893
Target Start/End: Original strand, 1830080 - 1830338
Alignment:
| Q |
635 |
ggatttgattgctctcggtttgtaggaggaaccaatataattg--ttgtgtctctttttctttctgtctatttgtgtttgtttaataagctgcattcaga |
732 |
Q |
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| T |
1830080 |
ggatttgattgctctcggtttgtgggaggaaccaatataattgatttgtgtctctttttctttctgtctatttgtgtttgtttaataagttgcattcaga |
1830179 |
T |
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| Q |
733 |
atttgagtcagaccatctcctttttcgttgcgaccattttagcaacgtttggtctgtggttttgcaatggcttcacttatccttttatcgctccattatg |
832 |
Q |
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| T |
1830180 |
atttgagtcagaccatctcctttttcgttgcgacccttttagcaacgtttggtctgcggttttgcaatggcttcacttatcc-tttatcgctccatcctg |
1830278 |
T |
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| Q |
833 |
gagtaggaatcactttttatcagtttggacatatgactgggttaccgcgctcttcgcacac |
893 |
Q |
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| T |
1830279 |
gagtaggaatcac-ttttatcaatttggacatatgactgggttactgcgttcttcacacac |
1830338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 72 - 276
Target Start/End: Original strand, 1828497 - 1828698
Alignment:
| Q |
72 |
aaatcaagaagtacatggataatatgttttaaactgaacgttgagtagggagacattattaagtcccacattgacagtttataaagcattgagaggaaac |
171 |
Q |
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| T |
1828497 |
aaatcaagaagtacatggataatatgttttaaactgaacgttgagtagggagacattattgagtcccacatcgacagtttataaagcattgagaggaaac |
1828596 |
T |
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| Q |
172 |
ctaagttataaatcggtaggggaatgccaccagtttaaaatacaatctaattgcgattacaatgctttcaaaatggagtaaccaaataaataattgatat |
271 |
Q |
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| T |
1828597 |
ctaagttataaatgggtaggggaatg-caccagtttaaaatacaatc-aaatgcaattgcaatgcagtcaaaatggagtaaccaaat-aataattgatat |
1828693 |
T |
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| Q |
272 |
aattt |
276 |
Q |
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| T |
1828694 |
aattt |
1828698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 557 - 623
Target Start/End: Original strand, 1830033 - 1830101
Alignment:
| Q |
557 |
tttagtgattatattggaaatcacttggaagtgtaag--gatttgatggatttgattgctctcggtttg |
623 |
Q |
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| T |
1830033 |
tttagtgattatagtggaaatcacttggaagtgaaagaggatttgatggatttgattgctctcggtttg |
1830101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 1846357 - 1846430
Alignment:
| Q |
111 |
gttgagtagggagacattattaagtcccacattgacagtttataaagcattgagaggaaacctaagttataaat |
184 |
Q |
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| T |
1846357 |
gttgagtagagagatagtaataagtcccacactggcagcttataaagcattgagaggaaacctttgttataaat |
1846430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 1842849 - 1842902
Alignment:
| Q |
131 |
taagtcccacattgacagtttataaagcattgagaggaaacctaagttataaat |
184 |
Q |
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| T |
1842849 |
taagtcccacatcggcagcttataaagcattgggaggaaaccttagctataaat |
1842902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 1848199 - 1848252
Alignment:
| Q |
131 |
taagtcccacattgacagtttataaagcattgagaggaaacctaagttataaat |
184 |
Q |
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| T |
1848199 |
taagtcccacattggcgtcttataaagcattgagaggaaaccttacttataaat |
1848252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 741 - 894
Target Start/End: Complemental strand, 41502714 - 41502564
Alignment:
| Q |
741 |
cagaccatctcctttttcgttgcgaccattttagcaacgtttggtctgtggttttgcaatggcttcacttatccttttatcgctccattatggagtagga |
840 |
Q |
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| T |
41502714 |
cagaccatgtgctttttcgttg-gatccttttagcaacgtatggtctgcggtcttgcagtggctttactta-ccctttattgctccatccggaagtagga |
41502617 |
T |
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| Q |
841 |
atcactttttatcagtttggacatatgactgggttaccgcgctcttcgcacaca |
894 |
Q |
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| T |
41502616 |
atcac-tttcatcagtttcgccagatggttgggttaccgcgttcttcacacaca |
41502564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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