View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5818-Insertion-3 (Length: 1065)
Name: NF5818-Insertion-3
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5818-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 662; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 9 - 734
Target Start/End: Complemental strand, 49516131 - 49515405
Alignment:
| Q |
9 |
catttggcttggaaccttcaacccaactatcaattcgaactatcaaattttttaagctatggctctccttgtctcccgagggattgattatgcacttgcc |
108 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49516131 |
catttggctaggaaccttcaacccaactatcaagtcgaactatcaaattttttaagctatggctctccttgtctcccgagggattgattatgcacttgcc |
49516032 |
T |
|
| Q |
109 |
aatattgattatgcacttgtcgaagaagatgcattataaaagaaagtgtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcc |
208 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49516031 |
aatattgattatgcacttgttgaagaagatgcattataaaagaaagtgtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcc |
49515932 |
T |
|
| Q |
209 |
tgtaaatttggatggttccttaacaaattagagtcagaagaacttttaactattgctcgtgagataggaaagatctattgtacattcagaaacgtgataa |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49515931 |
tgtaaatttggatggttccttaacaaattagagtcagaagaacttttaactattgctcctgagataggaaagatctattgtacattcagaaacgtgataa |
49515832 |
T |
|
| Q |
309 |
gtaatggatctacttcttgctattctgcaatagtatcaactataacagaaagtttctatccagatatgaattagggaccaataattgtgtcaatcgaagc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49515831 |
gtaatggatctacttcttgctattctgcaatagtatcaactataacagaaagtttctatccagatatgaattagggaccaataattgtgtcaatcgaagc |
49515732 |
T |
|
| Q |
409 |
caagcttgaatatggagcttctgttgtcgacttcatcatcacagaataattatgatcaatcagataatnnnnnnnttgtttactggtggcac-aattgat |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
49515731 |
caagcttgaatatggagcttctgttgtcgacttcatcatcacagaataattatgatcaatcagataataaaaaaattgtttaccggtggcacaaattgat |
49515632 |
T |
|
| Q |
508 |
atcattgagacatctgaatgactcggcaacttttcctcaagttgtgtgtcagtttgatgctcattatattatacttgttgcttatatgaattatgttgtt |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49515631 |
atcattgagacatctgaatgactcggcaacttttcctcaagttgtgtgtcagtttgatggtcattatattatacttgttgcttatatgaattatgttgtt |
49515532 |
T |
|
| Q |
608 |
gcatacttgtcggagcagcatccaccagtccaccaaattatgttcagcctaataaggtccacatttgatatgtctaatcctaataataaattttaggact |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49515531 |
gcatacttgtcggagcagcatccaccagtccaccaaattatgttcaccttaataaggtccacatttgatatgtccaatcctaataataaattttaggact |
49515432 |
T |
|
| Q |
708 |
ttattctttatctgtacatgagtagca |
734 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
49515431 |
ttattctttatctgtacatgagtagca |
49515405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 771 - 941
Target Start/End: Complemental strand, 49515370 - 49515198
Alignment:
| Q |
771 |
tgctagcaggtaaaggggaaatgttagtttacatggatagagacctggacctactcaaactccttagatgtcccttagctcaccaactgagctacctata |
870 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49515370 |
tgctagcaggtaa-ggggaaatgttagtttacatggatagagacctggacctactcaaactccttagatgtcccttagctcaccaactgagctacctata |
49515272 |
T |
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| Q |
871 |
tgggccgagtagcattatccttactacaagcttgaggacaaagtgtctcattag--agct-agtactgataaaa |
941 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
49515271 |
tgggccgagtaacattttccttactacaagcttgaggacaaagtgtctcattaggaagctaagtactgataaaa |
49515198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 136 - 378
Target Start/End: Original strand, 49516399 - 49516638
Alignment:
| Q |
136 |
gatgcattataaaagaaagtgtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcctgtaaatttggatggttccttaacaaa |
235 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| || || ||| ||| ||||| |||||||| |||| ||||||| |||||| ||| |||| |||| |||| |
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| T |
49516399 |
gatgtattatcaaagaaagtgggatgatgaactatcaggtgcaatgattttagtgatatctttcaagaatgcctttaaatt-ggacggtttcttatcaaa |
49516497 |
T |
|
| Q |
236 |
ttagagtcagaagaacttttaactattgctcgtgagataggaaagatctattgtacattcagaaacgtgataagtaatggatctacttcttgctattctg |
335 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||||||||||| | || || | |||| ||| | |||| ||| ||| ||||||||||| || |
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| T |
49516498 |
ttagagtcaaaagtacttttaactattgctcgtgagataggaaagatcaactgcacccttggaaatgtg--acgtaacggacctagttcttgctattatg |
49516595 |
T |
|
| Q |
336 |
caatagtatcaactataacagaaagtttctatccagatatgaa |
378 |
Q |
| |
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|| ||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
49516596 |
cagtagtatcaactataatcgaaaggttctatccaaatatgaa |
49516638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 555 - 634
Target Start/End: Original strand, 49516911 - 49516990
Alignment:
| Q |
555 |
gtcagtttgatgctcattatattatacttgttgcttatatgaattatgttgttgcatacttgtcggagcagcatccacca |
634 |
Q |
| |
|
||||||| ||| |||||||| ||||||| || | |||| ||||||||||||||||| |||| |||||||||||||||| |
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| T |
49516911 |
gtcagttcaatggtcattatactatactttttacctataggaattatgttgttgcatccttgctggagcagcatccacca |
49516990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 838 - 868
Target Start/End: Complemental strand, 867672 - 867642
Alignment:
| Q |
838 |
atgtcccttagctcaccaactgagctaccta |
868 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
867672 |
atgtcccttagctcaccaactgagctaccta |
867642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 282
Target Start/End: Complemental strand, 22990833 - 22990710
Alignment:
| Q |
156 |
gtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcctgtaaatttggatggttccttaacaaattagagtcagaagaactttt |
255 |
Q |
| |
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||||||||||| ||| | |||||| ||||| ||||| |||| || ||||||||| |||||||||||||| ||||| |||| || |||||||| | |
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| T |
22990833 |
gtgatgatgaactaggagttgtgatagttttggtgataactgtgaagaatgcctgtgaatttggatggttcgagaacaa---agagacacaagaacttct |
22990737 |
T |
|
| Q |
256 |
aactattgctcgtgagataggaaagat |
282 |
Q |
| |
|
||||||||||| ||||||| |||||| |
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|
| T |
22990736 |
aactattgctcacgagatagaaaagat |
22990710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 570 - 616
Target Start/End: Complemental strand, 22990306 - 22990260
Alignment:
| Q |
570 |
attatattatacttgttgcttatatgaattatgttgttgcatacttg |
616 |
Q |
| |
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||||||||||||||||||| ||||||| |||||||| ||||| |||| |
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| T |
22990306 |
attatattatacttgttgcctatatgagttatgttgatgcatccttg |
22990260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 868
Target Start/End: Complemental strand, 22550619 - 22550590
Alignment:
| Q |
839 |
tgtcccttagctcaccaactgagctaccta |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
22550619 |
tgtcccttagctcaccaactgagctaccta |
22550590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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