View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5818-Insertion-4 (Length: 1030)
Name: NF5818-Insertion-4
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5818-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 304 - 847
Target Start/End: Complemental strand, 4031679 - 4031121
Alignment:
| Q |
304 |
caaattaggttcaaagttttgatagttgttatgcacttgaaaatattattgttatcataattataagtacattcactctttaaatatcgagagagaagcc |
403 |
Q |
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| T |
4031679 |
caaattaggttcaaagttttgatagttgttatgcacttgaaaatattaatgttatcataattataagtacattcactctttaaatatcgagagagaagcc |
4031580 |
T |
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| Q |
404 |
tacattgaattcgagtcctctagagctgttttatgctacaacagctctaggggatccaaacaagactacctacaatgttttagaaaaacgatctaccact |
503 |
Q |
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| T |
4031579 |
tacattgaattcgagtcctctagagctgttttatgctacaacagctctaggggatccaaacaagactacctacaatgttttagaaaaacgatctaccact |
4031480 |
T |
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| Q |
504 |
ttgttcnnnnnnnnnnnnncgatctaccactgctatcatggtggcgacgtcaatgtttattttatatctttgcgattactttgtgattgcaattgtgacc |
603 |
Q |
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| T |
4031479 |
ttgttcaaaaaaacaaaaacgatctaccactgctatcatggtggcgacgtcaatgtttattttatatctttgcgattactttgtgattgcaattgtgacc |
4031380 |
T |
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| Q |
604 |
ataatttgtatataacccaattttagtacatgtaaaaaattgcaactgcaacacggctattatttaagaagaggatttgctatatatagcgaatttgttt |
703 |
Q |
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| T |
4031379 |
ataatttgtatataacccaattttagtacatataaaaaattgcaactgcaacacggctattatttaagaagaggatttgctatatatagcgaatttgttt |
4031280 |
T |
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| Q |
704 |
ttgtgaaatctcgcgggcgtgtgtttgataaa------------tgggaatcacttcagtcctggaatttgctgaaatcacccagtggtggggattggca |
791 |
Q |
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| T |
4031279 |
ttgtgaaatctcgcgagcgcgtgtttgataaaactacataacggatggaatcacttcagtcctggaatttgctgaaatcacccagtcgtggggattggca |
4031180 |
T |
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| Q |
792 |
acc-ataacacttattcgcaattgcttcatgat--gttccttcgctatatttatcattt |
847 |
Q |
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| T |
4031179 |
accaataacacttatttgcaattgcttcatgattgtttccttcgctatatttatcattt |
4031121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 4031974 - 4031736
Alignment:
| Q |
9 |
cattagggattgtgtataaggtggtgcttggaaatgggatgccggtggcggtgaggagattaggggagggtggagaagagaagtataaggagtttgtagc |
108 |
Q |
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| T |
4031974 |
cattagggattgtgtataaggtggtgcttggaaatgggatgccggtggcggtgaggagattaggggagggtggagaagagaagtataaggagtttgtagc |
4031875 |
T |
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| Q |
109 |
tgaggtgcaaaccattgggaaggttaagcatcctaatattgtgaggttgagagcttattattgggcacatgatgaaaagcttcttataagtgattttatt |
208 |
Q |
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| T |
4031874 |
tgaggtgcaaaccattgggaaggttaagcatcctaatattgtgaggttgagagcttattattgggcacatgatgaaaagcttcttataagtgattttatt |
4031775 |
T |
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| Q |
209 |
tccaatggcaatttgaacaacgcacttcgaggtcagttc |
247 |
Q |
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| T |
4031774 |
tccaatggcaatttgaacaatgcacttcgaggtcagttc |
4031736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 25882698 - 25882910
Alignment:
| Q |
11 |
ttagggattgtgtataaggtggtgcttggaaatgggatgccggtggcggtgaggagattaggggagggtggagaagagaagtataaggagtttgtagctg |
110 |
Q |
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| T |
25882698 |
ttagggattgtgtataaggtagtgcttgggaatggggtacctgtagctgtgaggagattgggggaaggtggtgaacaaaggtataaggaatttgctactg |
25882797 |
T |
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| Q |
111 |
aggtgcaaaccattgggaaggttaagcatcctaatattgtgaggttgagagcttattattgggcacatgatgaaaagcttcttataagtgattttatttc |
210 |
Q |
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| T |
25882798 |
aagttcaagcaattgggaaagtgaaacatcctaatattgttaagttaagagcttattattgggctcatgatgaaaagcttttgattagtgattttgtttc |
25882897 |
T |
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| Q |
211 |
caatggcaatttg |
223 |
Q |
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| T |
25882898 |
taatggcaatttg |
25882910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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