View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5818-Insertion-5 (Length: 814)

Name: NF5818-Insertion-5
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5818-Insertion-5
NF5818-Insertion-5
[»] chr3 (5 HSPs)
chr3 (32-550)||(47598783-47599301)
chr3 (616-814)||(47598520-47598717)
chr3 (8-51)||(47599316-47599359)
chr3 (655-766)||(31203325-31203438)
chr3 (434-463)||(30484880-30484909)
[»] chr5 (3 HSPs)
chr5 (616-759)||(8117175-8117319)
chr5 (658-766)||(28461395-28461504)
chr5 (433-466)||(30874635-30874668)
[»] chr1 (8 HSPs)
chr1 (629-796)||(25711018-25711186)
chr1 (616-761)||(36496838-36496982)
chr1 (623-766)||(50740760-50740901)
chr1 (656-766)||(19635608-19635719)
chr1 (432-466)||(47463666-47463700)
chr1 (433-466)||(33858165-33858198)
chr1 (433-466)||(33922725-33922758)
chr1 (433-466)||(19636115-19636148)
[»] chr6 (3 HSPs)
chr6 (618-761)||(31462652-31462797)
chr6 (656-761)||(15584904-15585010)
chr6 (499-547)||(31462532-31462580)
[»] chr8 (7 HSPs)
chr8 (616-740)||(25029387-25029511)
chr8 (616-749)||(27708128-27708260)
chr8 (679-761)||(13341354-13341437)
chr8 (433-466)||(5124565-5124598)
chr8 (433-466)||(27707956-27707989)
chr8 (433-466)||(25029659-25029692)
chr8 (436-465)||(32452458-32452487)
[»] scaffold0172 (2 HSPs)
scaffold0172 (616-761)||(30935-31081)
scaffold0172 (498-547)||(30818-30867)
[»] chr4 (6 HSPs)
chr4 (655-774)||(3124946-3125066)
chr4 (655-786)||(52643112-52643244)
chr4 (433-472)||(11388876-11388915)
chr4 (430-466)||(3125241-3125277)
chr4 (620-700)||(8367776-8367856)
chr4 (616-680)||(51850650-51850714)
[»] chr7 (5 HSPs)
chr7 (662-766)||(13726140-13726245)
chr7 (616-701)||(19835163-19835248)
chr7 (655-701)||(29452966-29453012)
chr7 (430-466)||(24375589-24375625)
chr7 (433-466)||(19423935-19423968)
[»] chr2 (7 HSPs)
chr2 (658-759)||(33803721-33803823)
chr2 (658-759)||(33808203-33808305)
chr2 (658-774)||(12733032-12733148)
chr2 (433-547)||(29264342-29264457)
chr2 (657-761)||(45710025-45710129)
chr2 (500-547)||(35819292-35819339)
chr2 (436-466)||(36421972-36422002)
[»] scaffold0252 (1 HSPs)
scaffold0252 (433-467)||(16648-16682)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 32 - 550
Target Start/End: Complemental strand, 47599301 - 47598783
Alignment:
Q  32 aaatcatgtatcaatattgtgttaactgataaaaagta--------aaacaaagaacataagtattatcgtacattgatcatcgtattttatttttcaat 123  Q
    |||||||||||||||||||| |||| ||||||||||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47599301 aaatcatgtatcaatattgtattaattgataaaaagtatacttttaaaacaaagaatataagtattatcgtacattgatcatcgtattttatttttcaat 47599202  T
Q  124 ctggttaaccttctataatgcatttcttattgtagtggaaacatattatttttaaattttaacaatagtggaaacatggttgatgtcacaccataggaat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47599201 ctggttaaccttctataatgcatttcttattgtagtggaaacatattatttttaaattttaacaatagtggaaacatggttgatgtcacaccatgggaat 47599102  T
Q  224 catattctgtgaagttgatgtattatcttgttaataaaaaagaaaatggtcctattgttatgattcttactcatgcccggtgcaaaagagcagggttacc 323  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  47599101 catatcctgtgaagctgatgtattatcttgttaatgaaaaagaaaatggtcctattgttatgattcttactcatgccaagtgcaaaagagcaggtttacc 47599002  T
Q  324 tttcgaccataatagtcaatcccgaacagcggtggattgtggtcgacttcaaaagtgggatagcgttaatggtatgataaataacagttactaaannnnn 423  Q
    |||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |          
T  47599001 tttcgaccataata-tcaatcccgaataacggtggatagtggtcgacttcaaaagtgggatagtgttaatggtatgataaatagcagttactga------ 47598909  T
Q  424 nnnnngtttgacaaattacatgaataatactataaagtataaaataaaacatacatttctcaacnnnnnnnnnncttatatttaatattatattaaatat 523  Q
          ||| |||||||||||||||||||||| ||| |||||||||||||||| |||||||||           |||||||||||||| |||||||||||    
T  47598908 ttttttttttacaaattacatgaataatactacaaaatataaaataaaacatatatttctcaa-aaaaaaaaaacttatatttaatataatattaaatat 47598810  T
Q  524 aagattcaaatctcacgagacatttat 550  Q
    |||| ||||||||||||||||||||||    
T  47598809 aagactcaaatctcacgagacatttat 47598783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 616 - 814
Target Start/End: Complemental strand, 47598717 - 47598520
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaa 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  47598717 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttaaaaaatgttagggtttacgaaattctataaatgccctaaa 47598618  T
Q  716 aagatttttaaaatagggttaatttaaaaatttcctattaaaatcagatagtggatgaaacggtcgttatcagctccgcactgttatacaactatttga 814  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  47598617 aagatttttaaaatagggttaatttaaaaatttcctattaaaatcagatattggatgaaacggtcgttatc-gctccgcactgttatacaactatttga 47598520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 47599359 - 47599316
Alignment:
Q  8 agtgacaactatggaaccggaaagaaatcatgtatcaatattgt 51  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  47599359 agtgacaactatggaactggaaagaaatcatgtatcaatattgt 47599316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 655 - 766
Target Start/End: Complemental strand, 31203438 - 31203325
Alignment:
Q  655 gtgagaagagagaaaat-gttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttccta 752  Q
    |||||| |||||||||  |||||||||||| ||||||||| |||||||  ||||  | | |||||| |||| ||||| | || |||||||||||||||||    
T  31203438 gtgagacgagagaaaagagttgaaaaatgtcagggtttacaaaatcctcaaaatatctttaaaaaggttttaaaaattgagtcaatttaaaaatttccta 31203339  T
Q  753 ttaaaatcagatag 766  Q
    ||||||||| ||||    
T  31203338 ttaaaatcatatag 31203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 463
Target Start/End: Original strand, 30484880 - 30484909
Alignment:
Q  434 acaaattacatgaataatactataaagtat 463  Q
    ||||||||||||||||||||||||||||||    
T  30484880 acaaattacatgaataatactataaagtat 30484909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 616 - 759
Target Start/End: Complemental strand, 8117319 - 8117175
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-a 714  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| |    
T  8117319 cataagatagaagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaatgccctaaa 8117220  T
Q  715 aaagatttttaaaatagggttaatttaaaaatttcctattaaaat 759  Q
    |||| |||| |||||||||| |||||  |||||||||| ||||||    
T  8117219 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaat 8117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 658 - 766
Target Start/End: Original strand, 28461395 - 28461504
Alignment:
Q  658 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaaaagatttttaaaat-agggttaatttaaaaatttcctattaa 756  Q
    |||||||| |||  ||||||||| | |||||||||| |||||||  ||||||| |||||| | ||||||||  || || ||||||||||||||||| |||    
T  28461395 agaagagaaaaagagttgaaaaacgatagggtttacaaaatcctcaaaatgccttaaaaaaagttttaaaaacagagtcaatttaaaaatttcctactaa 28461494  T
Q  757 aatcagatag 766  Q
    ||||| ||||    
T  28461495 aatcaaatag 28461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 30874635 - 30874668
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||||||||||||||||    
T  30874635 gacaaattacatgaataatactataaagtataaa 30874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 629 - 796
Target Start/End: Original strand, 25711018 - 25711186
Alignment:
Q  629 atagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaa 727  Q
    |||||||||||| ||||| ||||   ||||||||||||||||  |||||||||||||||||||||||||||||  |||| |||| |||||| |||| |||    
T  25711018 atagaagagtgtgtttcacggcacaggtgagaagagagaaaaacttgaaaaatgttagggtttacgaaatcctcaaaataccctaaaaaaggttttaaaa 25711117  T
Q  728 atagggttaatttaaaaatttcctattaaaatcagatagtggatgaaacggtcgttatcagctccgcac 796  Q
    ||||||| |||||  |||||||||| |||||||| || |||| |||| ||| || |||| |||||||||    
T  25711118 atagggtcaatttcgaaatttcctaataaaatcaaattgtggctgaagcggccgctatccgctccgcac 25711186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 616 - 761
Target Start/End: Complemental strand, 36496982 - 36496838
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaa- 714  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||  ||||||||| ||||||||||||| ||||||||||||||||  |||||| ||||     
T  36496982 cataagatagaagatagaagagtgtgtttcgcggcacatgtgag--gagagaaaaagttgaaaaatgttggggtttacgaaatcctcaaaatgctctaat 36496885  T
Q  715 aaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 761  Q
    |||  |||| ||||||||||||||||| |||||||||| ||||||||    
T  36496884 aaatgttttaaaaatagggttaatttagaaatttcctactaaaatca 36496838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 623 - 766
Target Start/End: Complemental strand, 50740901 - 50740760
Alignment:
Q  623 tagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatc-ctataaatgccctaaaaagatt 721  Q
    ||||| |||||||||||| ||||  ||||   |||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  50740901 tagaagatagaagagtgtgtttcgcggcaaatgtgagaagagagaaa--gttgaaaaatgttagggtttacgaaatctcta-aaatgccctaaaaaggtt 50740805  T
Q  722 tttaaaatagggttaatttaaaaatttcctattaaaatcagatag 766  Q
    || |||||||| | |||||  |||||||||| |||||||| ||||    
T  50740804 ttaaaaataggatcaatttggaaatttcctactaaaatcaaatag 50740760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 656 - 766
Target Start/End: Complemental strand, 19635719 - 19635608
Alignment:
Q  656 tgagaagagagaaaatgttgaaaaatgttagg-gtttacgaaatcctataaatgccctaaaaagatttttaaaatagggttaatttaaaaatttcctatt 754  Q
    ||||||||||||||  |||||||||||||| | ||||| |||||||   ||||||||||||||| |||| |||||||||| |||||  |||||||||| |    
T  19635719 tgagaagagagaaagagttgaaaaatgttaagagtttaagaaatccccaaaatgccctaaaaaggttttaaaaatagggtcaatttggaaatttcctact 19635620  T
Q  755 aaaatcagatag 766  Q
    ||||||| ||||    
T  19635619 aaaatcaaatag 19635608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 47463700 - 47463666
Alignment:
Q  432 tgacaaattacatgaataatactataaagtataaa 466  Q
    |||||||||||||||||||||||||||||||||||    
T  47463700 tgacaaattacatgaataatactataaagtataaa 47463666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 33858165 - 33858198
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||||||||||||||||    
T  33858165 gacaaattacatgaataatactataaagtataaa 33858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 33922758 - 33922725
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||||||||||||||||    
T  33922758 gacaaattacatgaataatactataaagtataaa 33922725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 19636148 - 19636115
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||| ||||||||||||    
T  19636148 gacaaattacatgaataatacgataaagtataaa 19636115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 618 - 761
Target Start/End: Original strand, 31462652 - 31462797
Alignment:
Q  618 taagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct--aaa 715  Q
    |||| ||||| |||||||||||| ||||| ||||   |||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||||  |||    
T  31462652 taaggtagaagatagaagagtgtgtttcacggcacaggtgagaagagagaaaaagttgaaaaatgttagggtttacgaaatcctcaaaataccctaaaaa 31462751  T
Q  716 aagatttttaaaatagggttaatttaaaaatttcctattaaaatca 761  Q
    ||| |||| |||||||| | |||||| |||||||||| ||||||||    
T  31462752 aaggttttaaaaataggctcaatttagaaatttcctactaaaatca 31462797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 656 - 761
Target Start/End: Original strand, 15584904 - 15585010
Alignment:
Q  656 tgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctatt 754  Q
    |||||||||| |||  |||||| ||||||||||||||||||||||   ||||||||| |||||| |||| |||||||||| ||||| ||||||||||| |    
T  15584904 tgagaagagaaaaagagttgaataatgttagggtttacgaaatccataaaatgccctaaaaaagtttttaaaaatagggtcaatttgaaaatttcctact 15585003  T
Q  755 aaaatca 761  Q
    |||||||    
T  15585004 aaaatca 15585010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 499 - 547
Target Start/End: Original strand, 31462532 - 31462580
Alignment:
Q  499 ttatatttaatattatattaaatataagattcaaatctcacgagacatt 547  Q
    ||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  31462532 ttatatttaatataaaattaaatataacactcaaatctcacgagacatt 31462580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 616 - 740
Target Start/End: Complemental strand, 25029511 - 25029387
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaa 715  Q
    |||||||||||| |||||||||||| ||||  |||    |||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||||||    
T  25029511 cataagatagaagatagaagagtgtgtttcgcggctcaggtgagaagagagaaaaagttgaaaaatgttagggtttacaaaatcctcaaaatgccctaaa 25029412  T
Q  716 aagatttttaaaatagggttaattt 740  Q
    ||| |||| |||||||||| |||||    
T  25029411 aaggttttaaaaatagggtcaattt 25029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 616 - 749
Target Start/End: Original strand, 27708128 - 27708260
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aa 714  Q
    |||||||||||| |||||| ||||| ||||  ||||  |||||   ||||||||| |||||||||| ||||||||| |||||||||  ||||||||| ||    
T  27708128 cataagatagaagatagaatagtgtgtttcgcggcacaagtgac--gagagaaaaagttgaaaaatattagggtttgcgaaatcctcaaaatgccctaaa 27708225  T
Q  715 aaagatttttaaaatagggttaatttaaaaatttc 749  Q
    |||| |||| |||||||||| |||||  |||||||    
T  27708226 aaaggttttaaaaatagggtcaatttggaaatttc 27708260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 679 - 761
Target Start/End: Complemental strand, 13341437 - 13341354
Alignment:
Q  679 aatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 761  Q
    ||||||||||||||| ||||||   ||||||||| |||||| |||| |||||||||| |||||  |||||||||| ||||||||    
T  13341437 aatgttagggtttaccaaatccccaaaatgccctcaaaaaggttttcaaaatagggtcaatttggaaatttcctactaaaatca 13341354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 5124598 - 5124565
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||||||||||||||||    
T  5124598 gacaaattacatgaataatactataaagtataaa 5124565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 27707956 - 27707989
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||||||||||||||||    
T  27707956 gacaaattacatgaataatactataaagtataaa 27707989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 25029692 - 25029659
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||| ||||||||||||||||    
T  25029692 gacaaattacatgaatattactataaagtataaa 25029659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 465
Target Start/End: Original strand, 32452458 - 32452487
Alignment:
Q  436 aaattacatgaataatactataaagtataa 465  Q
    ||||||||||||||||||||||||||||||    
T  32452458 aaattacatgaataatactataaagtataa 32452487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 616 - 761
Target Start/End: Original strand, 30935 - 31081
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aa 714  Q
    |||||||||||| |||||||||||||||||  ||||   |||||||||||||||| ||||||||||||| | ||||||||||||||  ||||| ||| ||    
T  30935 cataagatagaagatagaagagtgtatttcgcggcacaggtgagaagagagaaaaagttgaaaaatgttggcgtttacgaaatcctcaaaatgtcctaaa 31034  T
Q  715 aaagatttttaaaatagggttaatttaaaaatttcctattaaaatca 761  Q
    |||  |||| |||||| ||| ||||| ||||||||||| ||||||||    
T  31035 aaatgttttaaaaatacggtcaatttgaaaatttcctactaaaatca 31081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 30818 - 30867
Alignment:
Q  498 cttatatttaatattatattaaatataagattcaaatctcacgagacatt 547  Q
    |||||||||||||| | ||||||||||| | |||||||||| ||||||||    
T  30818 cttatatttaatataaaattaaatataacactcaaatctcatgagacatt 30867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 655 - 774
Target Start/End: Complemental strand, 3125066 - 3124946
Alignment:
Q  655 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-aaaagatttttaaaatagggttaatttaaaaatttcctat 753  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||  |||||||||| |||||||||| ||||||| || ||||| ||||||||||      
T  3125066 gtgagaagagagaaaaagttaaaaaatgttagggtttacgaattcctcaaaatgccctaaaaaagattttaaaaatagtgtcaatttgaaaatttcctgc 3124967  T
Q  754 taaaatcagatagtggatgaa 774  Q
    |||||||| ||||||| ||||    
T  3124966 taaaatcaaatagtggctgaa 3124946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 786
Target Start/End: Complemental strand, 52643244 - 52643112
Alignment:
Q  655 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctat 753  Q
    ||||||| |||||||  |||||||| ||||||||||||| ||||||   |||||| || |||||| |||| |||||||||| |||||  |||||||||      
T  52643244 gtgagaatagagaaagagttgaaaagtgttagggtttacaaaatccccaaaatgctctcaaaaaggttttaaaaatagggtcaatttggaaatttccttc 52643145  T
Q  754 taaaatcagatagtggatgaaacggtcgttatc 786  Q
    |||||||| | || || |||| |||| ||||||    
T  52643144 taaaatcaaacagcggctgaagcggttgttatc 52643112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 433 - 472
Target Start/End: Original strand, 11388876 - 11388915
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaaataaaa 472  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  11388876 gacaaattacatgaataatactctaaagtataaaataaaa 11388915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 3125277 - 3125241
Alignment:
Q  430 tttgacaaattacatgaataatactataaagtataaa 466  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3125277 tttgacaaattacatgaataatactatgaagtataaa 3125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 700
Target Start/End: Complemental strand, 8367856 - 8367776
Alignment:
Q  620 agatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcc 700  Q
    |||| ||| |||||||||||| ||||||||||    | ||||||||| ||  |||||||||||||||||||||| ||||||    
T  8367856 agatggaagatagaagagtgtgtttcatggcacatctaagaagagagtaagggttgaaaaatgttagggtttacaaaatcc 8367776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 680
Target Start/End: Original strand, 51850650 - 51850714
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaa 680  Q
    |||||||||||| |||||||||||| ||||  ||||   |||||||||||||||| |||||||||    
T  51850650 cataagatagaagatagaagagtgtgtttcgcggcacaggtgagaagagagaaaaagttgaaaaa 51850714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 662 - 766
Target Start/End: Complemental strand, 13726245 - 13726140
Alignment:
Q  662 gagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgcccta-aaaagatttttaaaatagggttaatttaaaaatttcctattaaaatc 760  Q
    ||||||||| |||||||||||  |||||||||||||||||  |||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |||||||    
T  13726245 gagagaaaaagttgaaaaatgacagggtttacgaaatcctcaaaatgccctaaaaaaggtttttaaaatagggtcaatttgaaaatttcctactaaaatc 13726146  T
Q  761 agatag 766  Q
    | ||||    
T  13726145 aaatag 13726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 616 - 701
Target Start/End: Complemental strand, 19835248 - 19835163
Alignment:
Q  616 cataagatagaatatagaagagtgtatttcatggcattagtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcct 701  Q
    |||||||||||| |||||||||||| ||||  ||||   |||| ||||||||||| |||||||||||| |||||||||||||||||    
T  19835248 cataagatagaagatagaagagtgtgtttcgcggcacaggtgaaaagagagaaaaagttgaaaaatgtcagggtttacgaaatcct 19835163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 701
Target Start/End: Original strand, 29452966 - 29453012
Alignment:
Q  655 gtgagaagagagaaaatgttgaaaaatgttagggtttacgaaatcct 701  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||    
T  29452966 gtgagaagagagaaaaagttgaaaaatgttatggtttacaaaatcct 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 24375625 - 24375589
Alignment:
Q  430 tttgacaaattacatgaataatactataaagtataaa 466  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24375625 tttgacaaattacatgaataatactataaactataaa 24375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 466
Target Start/End: Complemental strand, 19423968 - 19423935
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaa 466  Q
    ||||| ||||||||||||||||||||||||||||    
T  19423968 gacaatttacatgaataatactataaagtataaa 19423935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 658 - 759
Target Start/End: Original strand, 33803721 - 33803823
Alignment:
Q  658 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 756  Q
    ||||||||||||  |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||| || |||| || |||    
T  33803721 agaagagagaaagagttgaaaaatgttagggtttacgaaacccccaaaatgccctaaaaaagatttttaaaatatggttaatttagaattttcatactaa 33803820  T
Q  757 aat 759  Q
    |||    
T  33803821 aat 33803823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 658 - 759
Target Start/End: Original strand, 33808203 - 33808305
Alignment:
Q  658 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 756  Q
    ||||||||||||  |||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||| |||||||||| || |||| || |||    
T  33808203 agaagagagaaagagttgaaaaatgttagggtttacgaaacccccaaaatgccctaaaaaagatttttaaaatatggttaatttagaattttcatactaa 33808302  T
Q  757 aat 759  Q
    |||    
T  33808303 aat 33808305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 658 - 774
Target Start/End: Original strand, 12733032 - 12733148
Alignment:
Q  658 agaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccct-aaaaagatttttaaaatagggttaatttaaaaatttcctattaa 756  Q
    |||||||||||| ||||||||||||||||| ||||||||||||   ||||||||| |||||| |||| |||||| ||    ||| ||||||||||| |||    
T  12733032 agaagagagaaagtgttgaaaaatgttaggatttacgaaatccccaaaatgccctcaaaaaggttttaaaaatatgg-ccgtttgaaaatttcctactaa 12733130  T
Q  757 aatcagatagtggatgaa 774  Q
    ||||| ||||||| ||||    
T  12733131 aatcaaatagtggctgaa 12733148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 433 - 547
Target Start/End: Complemental strand, 29264457 - 29264342
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaaataaaacatacatttctcaacnnnnnnnnnn-cttatatttaatattatattaaatataagattca 531  Q
    ||||||||||||||||||||||||||||||||||  ||   ||| ||||||||||           |||||||||||||| | ||||||||||| | |||    
T  29264457 gacaaattacatgaataatactataaagtataaacaaacttataaatttctcaacaaaaaaaaaaacttatatttaatataaaattaaatataacactca 29264358  T
Q  532 aatctcacgagacatt 547  Q
    ||||||||||||||||    
T  29264357 aatctcacgagacatt 29264342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 761
Target Start/End: Original strand, 45710025 - 45710129
Alignment:
Q  657 gagaagagagaaaatgttgaaaaatgttagggtttacgaaatcctataaatgccctaaaaagatttttaaaatagggttaatttaaaaatttcctattaa 756  Q
    ||||||||||||||  |||||||||| |||||||||||| || ||  ||| || |||||||   ||| |||||||||| ||||| |||||||||||  ||    
T  45710025 gagaagagagaaaaatttgaaaaatgatagggtttacgatattctcaaaaagctctaaaaatgatttaaaaatagggtcaatttgaaaatttcctaccaa 45710124  T
Q  757 aatca 761  Q
    |||||    
T  45710125 aatca 45710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 547
Target Start/End: Complemental strand, 35819339 - 35819292
Alignment:
Q  500 tatatttaatattatattaaatataagattcaaatctcacgagacatt 547  Q
    |||||||||||| | ||||||||||| |||||||||||| ||||||||    
T  35819339 tatatttaatataaaattaaatataacattcaaatctcatgagacatt 35819292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 466
Target Start/End: Original strand, 36421972 - 36422002
Alignment:
Q  436 aaattacatgaataatactataaagtataaa 466  Q
    |||||||||||||||||||||||||||||||    
T  36421972 aaattacatgaataatactataaagtataaa 36422002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 467
Target Start/End: Original strand, 16648 - 16682
Alignment:
Q  433 gacaaattacatgaataatactataaagtataaaa 467  Q
    |||||||||||||||||||||||||||||| ||||    
T  16648 gacaaattacatgaataatactataaagtacaaaa 16682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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