View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5818-Insertion-7 (Length: 233)
Name: NF5818-Insertion-7
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5818-Insertion-7 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 61 - 233
Target Start/End: Original strand, 2773806 - 2773979
Alignment:
| Q |
61 |
ataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattctcaataaaataaga |
160 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
2773806 |
ataataattgtaatgttgttgcatctattttcagactttccatttttgaataataagtatgactatatcaaaccaaacttgtattcccaataaaataaga |
2773905 |
T |
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| Q |
161 |
cattctttcctaaaaccaatatggtagttaccagtttt-acaattgatatcagagctctattattggggcctga |
233 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||| |||||||||||||||| |
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| T |
2773906 |
cattctttcctaaaaccaatatggtagttatcagttttaacaattggtataagagctttattattggggcctga |
2773979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 2773718 - 2773781
Alignment:
| Q |
9 |
taatttgggtccattattaggaagaatgacttagttaattagtctacatattataataattgtaatgt |
76 |
Q |
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| T |
2773718 |
taatttgggtctattattaggaagaatgacttag----ttagtctacatattttaataattgtaatgt |
2773781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 2774719 - 2774777
Alignment:
| Q |
135 |
aaactcttattctcaataaaataagacattctttcctaaaaccaatatggtagttacca |
193 |
Q |
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| T |
2774719 |
aaactcttattctcaataaaataagacattctctcgtaatatcaaaatggtagttacca |
2774777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 15592081 - 15592267
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
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| T |
15592081 |
tagtctacacattataaggcttgtaatgtggttgcatctattctcacgctttccatttttgaattatgtgtaaggctatataaagtcaaactcttgttct |
15592180 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggtagttaccagtttt-acaattgatatcagagctctattattggggcctga |
233 |
Q |
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||||||||||||| ||||| || | |||||| ||||||| ||| ||||| ||||||| || |||||||| ||||||||||||||| |
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| T |
15592181 |
caataaaataagatattctctcattaaaccagtatggtaattaattgttttaacaattggtaccagagctccattattggggcctga |
15592267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 15601054 - 15601192
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
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|
||||||||| ||||||| |||||||||||| ||||||||| |||||||| |||||||||||| ||||||| | |||||| ||||||||||||| |||| |
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| T |
15601054 |
tagtctacacattataaggcttgtaatgtggtagcatctattctcacgctttccatttttgaattatgtgtaaggctatataaagtcaaactcttgttct |
15601153 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggta |
186 |
Q |
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||||||||||||| ||||| || | |||||| ||||||| |
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| T |
15601154 |
caataaaataagatattctctcattaaaccagtatggta |
15601192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 11847211 - 11847393
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||| | |||||| ||| ||||||||| |||| |
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| T |
11847211 |
tagtctacacattataaggcttgtaatgtggttgcatctattctcacgctttccatttttgaattatgtgtaaggctatataaagccaaactcttgttct |
11847310 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggtagttaccagtttt-acaattgatatcagagctctattattggggc |
229 |
Q |
| |
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||||||||||||| ||||| || | |||||| || |||| ||| ||||| ||||||| ||||||||||| ||||||||||| |
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| T |
11847311 |
caataaaataagatattctctcattaaaccagtacggtaattaattgttttaacaattggtatcagagctccattattggggc |
11847393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 11851595 - 11851733
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||| | |||||| |||||||||||| ||||||| | |||||| ||||||||||||| |||| |
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| T |
11851595 |
tagtctacacattataaggcttgtaatgtggttgcatctattcttacgctttccatttttgaattatgtgtaaggctatataaagtcaaactcttgttct |
11851694 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggta |
186 |
Q |
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||||||||||||| ||||| || | |||||| ||||||| |
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| T |
11851695 |
caataaaataagatattctctcattaaaccagtatggta |
11851733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 5874932 - 5875118
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||||| |||||| ||||||| | |||||| ||| ||||||||| |||| |
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| T |
5874932 |
tagtctacacattataaggcttgtcatgtggttgcatctattctcacgctttccattattgaattatgtgtaaggctatataaagccaaactcttgttct |
5875031 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggtagttaccagtttt-acaattgatatcagagctctattattggggcctga |
233 |
Q |
| |
|
||||||||||||| ||||| || | |||||| ||||||| ||| ||||| ||||||| |||||||| || ||||||||||||||| |
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| T |
5875032 |
caataaaataagatattctctcattaaaccagtatggtaattaattgttttaacaattggtatcagagatccattattggggcctga |
5875118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 5878291 - 5878429
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||||||| | |||||| ||| ||||||||| |||| |
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| T |
5878291 |
tagtctacacattataaggcttgtaatgtggttgcatctattctcacgctttccattattgaattatgtgtaaggctatataaagccaaactcttgttct |
5878390 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggta |
186 |
Q |
| |
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||||||||||||| ||||| || | |||||||||||||| |
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| T |
5878391 |
caataaaataagatattctctcattaaaccaatatggta |
5878429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 14655592 - 14655408
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgac--tatatcaagtcaaactcttatt |
145 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||||||||||| ||| |||||||||||| ||||||| | | ||||| ||| ||||||||| || |
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| T |
14655592 |
tagtctacacattataaggcttgcaatgtggttgcatctattttcacactttccatttttgaatcatgtgtaaggctatatataaagccaaactcttgtt |
14655493 |
T |
|
| Q |
146 |
ctcaataaaataagacattctttcctaaaaccaatatggtagttaccagt-tttacaattgatatcagagctctattattggggc |
229 |
Q |
| |
|
|| |||||||||||||||||| || ||||| |||||||||||||| ||| || ||||||| ||||| ||||| ||||||||||| |
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| T |
14655492 |
cttaataaaataagacattctctcataaaatcaatatggtagttattagtattaacaattggtatcaaagctccattattggggc |
14655408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 20049390 - 20049225
Alignment:
| Q |
68 |
ttgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattctcaataaaataagacattctt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||| ||||||| | |||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
20049390 |
ttgtaatgtggttgcatctattttcacgctttctatttttgaatcatgtgtaaggctatataaagccaaactcttgttctcaataaaataagacattctc |
20049291 |
T |
|
| Q |
168 |
tcctaaaaccaatatggtagttaccagt-tttacaattgatatcagagctctattattggggcctga |
233 |
Q |
| |
|
|| || ||||| ||| | ||||| || || ||||||| ||||||||||| ||||||||| ||||| |
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|
| T |
20049290 |
tcatagaaccagtat-gaagttattggtattaacaattggtatcagagctccattattgggacctga |
20049225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 13767418 - 13767326
Alignment:
| Q |
68 |
ttgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattctcaataaaataaga |
160 |
Q |
| |
|
|||||||||||||||||||| ||| | | || ||||||||||| ||||||| | ||||| ||||||||||||| ||||||||||||||||| |
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| T |
13767418 |
ttgtaatgtggttgcatctacttttatgattttcatttttgaatcatgtgtaaggttatataaagtcaaactcttgttctcaataaaataaga |
13767326 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 51189826 - 51189956
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| ||| |||| |||||||||||| ||||||| | |||||| ||| ||||||||| |||| |
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|
| T |
51189826 |
tagtctacacattataaggcttgtaatgtggttgcatctattctcatgctttccatttttgaattatgtgtaaggctatataaagccaaactcttgttct |
51189925 |
T |
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| Q |
148 |
caataaaataagacattctttcctaaaacca |
178 |
Q |
| |
|
||||||||||||| ||||| || |||||||| |
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| T |
51189926 |
caataaaataagatattctctcataaaacca |
51189956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 38296857 - 38296995
Alignment:
| Q |
48 |
tagtctacatattataataattgtaatgtggttgcatctattttcacgcttcccatttttgaataatgtgtatgactatatcaagtcaaactcttattct |
147 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||| | ||||| || ||||||||| |||| |
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| T |
38296857 |
tagtctacacattataaggcttgtaatgtggttgcatctattctcacgctttccatttttgaattatgtgtaaggttatataaaaccaaactcttgttct |
38296956 |
T |
|
| Q |
148 |
caataaaataagacattctttcctaaaaccaatatggta |
186 |
Q |
| |
|
||||||||||||| ||||| || ||||| || ||||||| |
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|
| T |
38296957 |
caataaaataagatattctctcataaaatcagtatggta |
38296995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 26545009 - 26545046
Alignment:
| Q |
196 |
tttacaattgatatcagagctctattattggggcctga |
233 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26545009 |
tttacaattggtatcagagctccattattggggcctga |
26545046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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