View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5818_high_1 (Length: 484)

Name: NF5818_high_1
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5818_high_1
NF5818_high_1
[»] chr3 (3 HSPs)
chr3 (1-443)||(47598858-47599301)
chr3 (424-467)||(47599316-47599359)
chr3 (12-41)||(30484880-30484909)
[»] chr4 (3 HSPs)
chr4 (3-42)||(11388876-11388915)
chr4 (9-45)||(3125241-3125277)
chr4 (9-41)||(54857083-54857115)
[»] chr1 (5 HSPs)
chr1 (9-43)||(47463666-47463700)
chr1 (9-42)||(33858165-33858198)
chr1 (9-42)||(33922725-33922758)
chr1 (9-42)||(19636115-19636148)
chr1 (9-45)||(44288056-44288092)
[»] chr8 (4 HSPs)
chr8 (9-42)||(5124565-5124598)
chr8 (9-42)||(27707956-27707989)
chr8 (9-42)||(25029659-25029692)
chr8 (10-39)||(32452458-32452487)
[»] chr5 (1 HSPs)
chr5 (9-42)||(30874635-30874668)
[»] chr2 (2 HSPs)
chr2 (9-42)||(29264424-29264457)
chr2 (9-39)||(36421972-36422002)
[»] chr7 (2 HSPs)
chr7 (9-45)||(24375589-24375625)
chr7 (9-42)||(19423935-19423968)
[»] scaffold0252 (1 HSPs)
scaffold0252 (8-42)||(16648-16682)
[»] chr6 (1 HSPs)
chr6 (9-45)||(31462464-31462500)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 47598858 - 47599301
Alignment:
Q  1 tgttttattttatactttatagtattattcatgtaatttgtcaaacnnnnnnnnnntttagtaactgttatttatcataccattaacgctatcccacttt 100  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||            | |||||||| ||||||||||||||||||| ||||||||||||    
T  47598858 tgttttattttatattttgtagtattattcatgtaatttgtaaaaaaaaaa------tcagtaactgctatttatcataccattaacactatcccacttt 47598951  T
Q  101 tgaagtcgaccacaatccaccgctgttcgggattgactattatggtcgaaaggtaaccctgctcttttgcaccgggcatgagtaagaatcataacaatag 200  Q
    ||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||    
T  47598952 tgaagtcgaccactatccaccgttattcgggattga-tattatggtcgaaaggtaaacctgctcttttgcacttggcatgagtaagaatcataacaatag 47599050  T
Q  201 gaccattttcttttttattaacaagataatacatcaacttcacagaatatgattcctatggtgtgacatcaaccatgtttccactattgttaaaatttaa 300  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47599051 gaccattttctttttcattaacaagataatacatcagcttcacaggatatgattcccatggtgtgacatcaaccatgtttccactattgttaaaatttaa 47599150  T
Q  301 aaataatatgtttccactacaataagaaatgcattatagaaggttaaccagattgaaaaataaaatacgatgatcaatgtacgataatacttatgttctt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47599151 aaataatatgtttccactacaataagaaatgcattatagaaggttaaccagattgaaaaataaaatacgatgatcaatgtacgataatacttatattctt 47599250  T
Q  401 tgttt--------tactttttatcagttaacacaatattgatacatgattt 443  Q
    |||||        |||||||||||| |||| ||||||||||||||||||||    
T  47599251 tgttttaaaagtatactttttatcaattaatacaatattgatacatgattt 47599301  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 467
Target Start/End: Original strand, 47599316 - 47599359
Alignment:
Q  424 acaatattgatacatgatttctttccggttccatagttgtcact 467  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  47599316 acaatattgatacatgatttctttccagttccatagttgtcact 47599359  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 30484909 - 30484880
Alignment:
Q  12 atactttatagtattattcatgtaatttgt 41  Q
    ||||||||||||||||||||||||||||||    
T  30484909 atactttatagtattattcatgtaatttgt 30484880  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 11388915 - 11388876
Alignment:
Q  3 ttttattttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  11388915 ttttattttatactttagagtattattcatgtaatttgtc 11388876  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 3125241 - 3125277
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtcaaa 45  Q
    ||||||||| |||||||||||||||||||||||||||    
T  3125241 tttatacttcatagtattattcatgtaatttgtcaaa 3125277  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 54857083 - 54857115
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgt 41  Q
    ||||||||||||| |||||||||||||||||||    
T  54857083 tttatactttatactattattcatgtaatttgt 54857115  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 47463666 - 47463700
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtca 43  Q
    |||||||||||||||||||||||||||||||||||    
T  47463666 tttatactttatagtattattcatgtaatttgtca 47463700  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 33858198 - 33858165
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  33858198 tttatactttatagtattattcatgtaatttgtc 33858165  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 33922725 - 33922758
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  33922725 tttatactttatagtattattcatgtaatttgtc 33922758  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 19636115 - 19636148
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    |||||||||||| |||||||||||||||||||||    
T  19636115 tttatactttatcgtattattcatgtaatttgtc 19636148  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 44288056 - 44288092
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtcaaa 45  Q
    |||||| |||||||||||||| |||||||||||||||    
T  44288056 tttataatttatagtattatttatgtaatttgtcaaa 44288092  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 5124565 - 5124598
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  5124565 tttatactttatagtattattcatgtaatttgtc 5124598  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 27707989 - 27707956
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  27707989 tttatactttatagtattattcatgtaatttgtc 27707956  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 25029659 - 25029692
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    |||||||||||||||| |||||||||||||||||    
T  25029659 tttatactttatagtaatattcatgtaatttgtc 25029692  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 32452487 - 32452458
Alignment:
Q  10 ttatactttatagtattattcatgtaattt 39  Q
    ||||||||||||||||||||||||||||||    
T  32452487 ttatactttatagtattattcatgtaattt 32452458  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 30874668 - 30874635
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  30874668 tttatactttatagtattattcatgtaatttgtc 30874635  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 29264424 - 29264457
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    ||||||||||||||||||||||||||||||||||    
T  29264424 tttatactttatagtattattcatgtaatttgtc 29264457  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 36422002 - 36421972
Alignment:
Q  9 tttatactttatagtattattcatgtaattt 39  Q
    |||||||||||||||||||||||||||||||    
T  36422002 tttatactttatagtattattcatgtaattt 36421972  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 24375589 - 24375625
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtcaaa 45  Q
    |||||| ||||||||||||||||||||||||||||||    
T  24375589 tttatagtttatagtattattcatgtaatttgtcaaa 24375625  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 19423935 - 19423968
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtc 42  Q
    |||||||||||||||||||||||||||| |||||    
T  19423935 tttatactttatagtattattcatgtaaattgtc 19423968  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 16682 - 16648
Alignment:
Q  8 ttttatactttatagtattattcatgtaatttgtc 42  Q
    |||| ||||||||||||||||||||||||||||||    
T  16682 ttttgtactttatagtattattcatgtaatttgtc 16648  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 31462500 - 31462464
Alignment:
Q  9 tttatactttatagtattattcatgtaatttgtcaaa 45  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  31462500 tttataccttatagtattattcatgtagtttgtcaaa 31462464  T

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