View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5818_high_2 (Length: 227)

Name: NF5818_high_2
Description: NF5818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5818_high_2
NF5818_high_2
[»] chr3 (2 HSPs)
chr3 (1-210)||(47598526-47598734)
chr3 (43-154)||(31203325-31203438)
[»] chr5 (2 HSPs)
chr5 (50-210)||(8117175-8117336)
chr5 (43-151)||(28461395-28461504)
[»] chr6 (2 HSPs)
chr6 (48-210)||(31462633-31462797)
chr6 (48-153)||(15584904-15585010)
[»] scaffold0172 (1 HSPs)
scaffold0172 (48-209)||(30919-31081)
[»] chr8 (3 HSPs)
chr8 (69-210)||(25029387-25029528)
chr8 (60-210)||(27708111-27708260)
chr8 (48-130)||(13341354-13341437)
[»] chr7 (3 HSPs)
chr7 (43-210)||(13726140-13726306)
chr7 (108-210)||(19835163-19835265)
chr7 (108-154)||(29452966-29453012)
[»] chr1 (4 HSPs)
chr1 (13-180)||(25711018-25711186)
chr1 (48-210)||(36496838-36496999)
chr1 (43-186)||(50740760-50740901)
chr1 (43-153)||(19635608-19635719)
[»] chr4 (4 HSPs)
chr4 (35-154)||(3124946-3125066)
chr4 (129-206)||(51850637-51850714)
chr4 (23-154)||(52643112-52643244)
chr4 (109-189)||(8367776-8367856)
[»] chr2 (4 HSPs)
chr2 (50-151)||(33803721-33803823)
chr2 (50-151)||(33808203-33808305)
chr2 (35-151)||(12733032-12733148)
chr2 (48-152)||(45710025-45710129)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 47598526 - 47598734
Alignment:
Q  1 agttgtataacagtgcggagctgataacgaccgtttcatccactatctgattttaataggaaatttttaaattaaccctattttaaaaatctttttaggg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47598526 agttgtataacagtgcggagc-gataacgaccgtttcatccaatatctgattttaataggaaatttttaaattaaccctattttaaaaatctttttaggg 47598624  T
Q  101 catttataggatttcgtaaaccctaacatttttcaacattttctctcttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtc 200  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47598625 catttatagaatttcgtaaaccctaacattttttaacattttctctcttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtc 47598724  T
Q  201 ttgttttatg 210  Q
    ||||||||||    
T  47598725 ttgttttatg 47598734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 31203325 - 31203438
Alignment:
Q  43 ctatctgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatttttcaac-att 140  Q
    |||| |||||||||||||||||||||||||| || | ||||| |||| |||||| | |  ||||  ||||||| ||||||||| ||||||||||||  ||    
T  31203325 ctatatgattttaataggaaatttttaaattgactcaatttttaaaacctttttaaagatattttgaggattttgtaaaccctgacatttttcaactctt 31203424  T
Q  141 ttctctcttctcac 154  Q
    ||||||| ||||||    
T  31203425 ttctctcgtctcac 31203438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 8117175 - 8117336
Alignment:
Q  50 attttaataggaaatttttaaattaaccctattttaaaaatctttt-tagggcatttataggatttcgtaaaccctaacatttttcaacattttctctct 148  Q
    |||||| ||||||||||  ||||| |||||||||| |||| ||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  8117175 attttagtaggaaatttccaaattgaccctatttttaaaaccttttttagggcattttgaggatttcgtaaaccctaacatttttcaactttttctctct 8117274  T
Q  149 tctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgttttatg 210  Q
    ||||||   ||||  |||| |||||||||||| |||||||||||||||| || |||||||||    
T  8117275 tctcacctgtgccgcgaaacacactcttctatcttctatcttatggtttctcctgttttatg 8117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 28461504 - 28461395
Alignment:
Q  43 ctatctgattttaataggaaatttttaaattaaccct-attttaaaaatctttttagggcatttataggatttcgtaaaccctaacatttttcaacattt 141  Q
    |||| |||||||| ||||||||||||||||| || ||  |||||||| | |||||| |||||||  ||||||| |||||||||| | |||||||||  ||    
T  28461504 ctatttgattttagtaggaaatttttaaattgactctgtttttaaaactttttttaaggcattttgaggattttgtaaaccctatcgtttttcaactctt 28461405  T
Q  142 tctctcttct 151  Q
    | ||||||||    
T  28461404 tttctcttct 28461395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 31462797 - 31462633
Alignment:
Q  48 tgattttaataggaaatttttaaattaaccctattttaaaaatcttttt--agggcatttataggatttcgtaaaccctaacatttttcaacattttctc 145  Q
    |||||||| |||||||||| |||||| | |||||||| |||| ||||||  |||| ||||  |||||||||||||||||||||||||||||| |||||||    
T  31462797 tgattttagtaggaaatttctaaattgagcctatttttaaaacctttttttagggtattttgaggatttcgtaaaccctaacatttttcaactttttctc 31462698  T
Q  146 tcttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgttttatg 210  Q
    |||||||||   |||| ||||| |||||||||||| ||||| |||| ||||| ||||||||||||    
T  31462697 tcttctcacctgtgccgtgaaacacactcttctatcttctaccttacggtttctcttgttttatg 31462633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 15585010 - 15584904
Alignment:
Q  48 tgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatttttcaacattttctct 146  Q
    |||||||| ||||||||||| ||||| |||||||||| |||| |||||| |||||||||   |||||||||||||||||||||| ||||||  ||| |||    
T  15585010 tgattttagtaggaaattttcaaattgaccctatttttaaaaacttttttagggcattttatggatttcgtaaaccctaacattattcaactctttttct 15584911  T
Q  147 cttctca 153  Q
    |||||||    
T  15584910 cttctca 15584904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 31081 - 30919
Alignment:
Q  48 tgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatttttcaacattttctct 146  Q
    |||||||| ||||||||||| ||||| ||| |||||| ||||  ||||| ||| |||||  |||||||||||||| | ||||||||||||| ||||||||    
T  31081 tgattttagtaggaaattttcaaattgaccgtatttttaaaacattttttaggacattttgaggatttcgtaaacgccaacatttttcaactttttctct 30982  T
Q  147 cttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgttttat 209  Q
    ||||||||   ||||  ||||||||||||||||| |||||||||||||||| |||||||||||    
T  30981 cttctcacctgtgccgcgaaatacactcttctatcttctatcttatggtttctcttgttttat 30919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 25029387 - 25029528
Alignment:
Q  69 aaattaaccctattttaaaaatctttttagggcatttataggatttcgtaaaccctaacatttttcaacattttctctcttctcactaatgccatgaaat 168  Q
    ||||| |||||||||| |||| |||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||    |||  ||||     
T  25029387 aaattgaccctatttttaaaacctttttagggcattttgaggattttgtaaaccctaacatttttcaactttttctctcttctcacctgagccgcgaaac 25029486  T
Q  169 acactcttctatattctatcttatggtttgtcttgttttatg 210  Q
    |||||||||||| |||||||||||||||| || | |||||||    
T  25029487 acactcttctatcttctatcttatggtttctcctattttatg 25029528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 27708260 - 27708111
Alignment:
Q  60 gaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatttttcaacattttctctcttctcactaat 158  Q
    |||||||  ||||| |||||||||| |||| |||||| |||||||||  ||||||||| ||||||||| |||||||||| |||||||||   |||||  |    
T  27708260 gaaatttccaaattgaccctatttttaaaaccttttttagggcattttgaggatttcgcaaaccctaatatttttcaactttttctctc--gtcacttgt 27708163  T
Q  159 gccatgaaatacactcttctatattctatcttatggtttgtcttgttttatg 210  Q
    |||  |||| ||||| |||||| |||||||||||||||| ||||||||||||    
T  27708162 gccgcgaaacacactattctatcttctatcttatggtttctcttgttttatg 27708111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 13341354 - 13341437
Alignment:
Q  48 tgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatt 130  Q
    |||||||| ||||||||||  ||||| |||||||||| |||| |||||| |||||||||   |||||| |||||||||||||||    
T  13341354 tgattttagtaggaaatttccaaattgaccctattttgaaaacctttttgagggcattttggggatttggtaaaccctaacatt 13341437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 13726140 - 13726306
Alignment:
Q  43 ctatctgattttaataggaaatttttaaattaaccctattttaaaaatctttt-tagggcatttataggatttcgtaaaccctaacatttttcaacattt 141  Q
    |||| |||||||| ||||||||||| ||||| ||||||||||||||| ||||| ||||||||||  |||||||||||||||||  ||||||||||| |||    
T  13726140 ctatttgattttagtaggaaattttcaaattgaccctattttaaaaaccttttttagggcattttgaggatttcgtaaaccctgtcatttttcaactttt 13726239  T
Q  142 tctctcttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgttttatg 210  Q
    ||||||  || ||   ||||  |||| |||||||| ||| |||||||||||||||| ||||||||||||    
T  13726240 tctctc--ctaacctgtgccgcgaaacacactcttttatcttctatcttatggtttctcttgttttatg 13726306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 19835163 - 19835265
Alignment:
Q  108 aggatttcgtaaaccctaacatttttcaacattttctctcttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgtttt 207  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||   ||||  |||| |||||||||||| |||||||||||||||| |||||||||    
T  19835163 aggatttcgtaaaccctgacatttttcaactttttctctcttttcacctgtgccgcgaaacacactcttctatcttctatcttatggtttctcttgtttt 19835262  T
Q  208 atg 210  Q
    |||    
T  19835263 atg 19835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 29453012 - 29452966
Alignment:
Q  108 aggatttcgtaaaccctaacatttttcaacattttctctcttctcac 154  Q
    ||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  29453012 aggattttgtaaaccataacatttttcaactttttctctcttctcac 29452966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 25711186 - 25711018
Alignment:
Q  13 gtgcggagctgataacgaccgtttcatccactatctgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttatagga 111  Q
    ||||||||| |||| || ||| |||| |||| || |||||||| ||||||||||  ||||| |||||||||| |||| |||||| |||| ||||  ||||    
T  25711186 gtgcggagcggatagcggccgcttcagccacaatttgattttattaggaaatttcgaaattgaccctatttttaaaaccttttttagggtattttgagga 25711087  T
Q  112 tttcgtaaaccctaacatttttcaacattttctctcttctcactaatgccatgaaatacactcttctat 180  Q
    |||||||||||||||||||||||||  ||||||||||||||||   |||| ||||| ||||||||||||    
T  25711086 tttcgtaaaccctaacatttttcaagtttttctctcttctcacctgtgccgtgaaacacactcttctat 25711018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 36496838 - 36496999
Alignment:
Q  48 tgattttaataggaaatttttaaattaaccctattttaaaaatcttt-ttagggcatttataggatttcgtaaaccctaacatttttcaacattttctct 146  Q
    |||||||| |||||||||| ||||||||||||||||| ||||  ||| |||| ||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  36496838 tgattttagtaggaaatttctaaattaaccctatttttaaaacatttattagagcattttgaggatttcgtaaaccccaacatttttcaactttttctct 36496937  T
Q  147 cttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgttttatg 210  Q
    |  |||||   ||||  |||| |||||||||||| ||||||||||||||||  |||||||||||    
T  36496938 c--ctcacatgtgccgcgaaacacactcttctatcttctatcttatggtttcgcttgttttatg 36496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 50740760 - 50740901
Alignment:
Q  43 ctatctgattttaataggaaatttttaaattaaccctattttaaaaatctttttagggcatttatag-gatttcgtaaaccctaacatttttcaacattt 141  Q
    |||| |||||||| ||||||||||  ||||| | |||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||  ||    
T  50740760 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcattt-tagagatttcgtaaaccctaacatttttcaac--tt 50740856  T
Q  142 tctctcttctcactaatgccatgaaatacactcttctatattcta 186  Q
    |||||||||||||   ||||  |||| |||||||||||| |||||    
T  50740857 tctctcttctcacatttgccgcgaaacacactcttctatcttcta 50740901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 19635608 - 19635719
Alignment:
Q  43 ctatctgattttaataggaaatttttaaattaaccctattttaaaaatctttttagggcatttataggatttcgtaaac-cctaacatttttcaacattt 141  Q
    |||| |||||||| ||||||||||  ||||| |||||||||| |||| |||||||||||||||   ||||||| ||||| | ||||||||||||||  ||    
T  19635608 ctatttgattttagtaggaaatttccaaattgaccctatttttaaaacctttttagggcattttggggatttcttaaactcttaacatttttcaactctt 19635707  T
Q  142 tctctcttctca 153  Q
    ||||||||||||    
T  19635708 tctctcttctca 19635719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 3124946 - 3125066
Alignment:
Q  35 ttcatccactatctgattttaataggaaatttttaaattaaccctattttaaaaatctttt-tagggcatttataggatttcgtaaaccctaacattttt 133  Q
    |||| ||||||| ||||||||  |||||||||| ||||| || ||||||| |||||||||| ||||||||||  |||| |||||||||||||||||||||    
T  3124946 ttcagccactatttgattttagcaggaaattttcaaattgacactatttttaaaatcttttttagggcattttgaggaattcgtaaaccctaacattttt 3125045  T
Q  134 caacattttctctcttctcac 154  Q
     ||| ||||||||||||||||    
T  3125046 taactttttctctcttctcac 3125066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 51850714 - 51850637
Alignment:
Q  129 tttttcaacattttctctcttctcactaatgccatgaaatacactcttctatattctatcttatggtttgtcttgttt 206  Q
    ||||||||| ||||||||||||||||   ||||  |||| |||||||||||| |||||||||||||||| ||||||||    
T  51850714 tttttcaactttttctctcttctcacctgtgccgcgaaacacactcttctatcttctatcttatggtttctcttgttt 51850637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 52643112 - 52643244
Alignment:
Q  23 gataacgaccgtttcatccactatctgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaac 121  Q
    |||||| |||| |||| || || | ||||||||  |||||||||  ||||| |||||||||| |||| |||||| || ||||||   |||||| ||||||    
T  52643112 gataacaaccgcttcagccgctgtttgattttagaaggaaatttccaaattgaccctatttttaaaacctttttgagagcattttggggattttgtaaac 52643211  T
Q  122 cctaacatttttcaacattttctctcttctcac 154  Q
    ||||||| ||||||||  ||||||| |||||||    
T  52643212 cctaacacttttcaactctttctctattctcac 52643244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 8367776 - 8367856
Alignment:
Q  109 ggatttcgtaaaccctaacatttttcaacattttctctcttctcactaatgccatgaaatacactcttctatattctatct 189  Q
    |||||| ||||||||||||||||||||||  || ||||||||| |    |||||||||| |||||||||||| ||| ||||    
T  8367776 ggattttgtaaaccctaacatttttcaacccttactctcttcttagatgtgccatgaaacacactcttctatcttccatct 8367856  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 33803823 - 33803721
Alignment:
Q  50 attttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatttttcaacattttctctct 148  Q
    |||||| || |||| || |||||||||| |||||||||||||||||| |||||||||   || ||||||||||||||||||||||||||  |||||||||    
T  33803823 attttagtatgaaaattctaaattaaccatattttaaaaatcttttttagggcattttgggggtttcgtaaaccctaacatttttcaactctttctctct 33803724  T
Q  149 tct 151  Q
    |||    
T  33803723 tct 33803721  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 33808305 - 33808203
Alignment:
Q  50 attttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacatttttcaacattttctctct 148  Q
    |||||| || |||| || |||||||||| |||||||||||||||||| |||||||||   || ||||||||||||||||||||||||||  |||||||||    
T  33808305 attttagtatgaaaattctaaattaaccatattttaaaaatcttttttagggcattttgggggtttcgtaaaccctaacatttttcaactctttctctct 33808206  T
Q  149 tct 151  Q
    |||    
T  33808205 tct 33808203  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 12733148 - 12733032
Alignment:
Q  35 ttcatccactatctgattttaataggaaatttttaaattaaccctattttaaaaatcttttt-agggcatttataggatttcgtaaaccctaacattttt 133  Q
    |||| ||||||| |||||||| ||||||||||| |||    || |||||| |||| |||||| |||||||||   |||||||||||| ||||||||||||    
T  12733148 ttcagccactatttgattttagtaggaaattttcaaacgg-ccatatttttaaaacctttttgagggcattttggggatttcgtaaatcctaacattttt 12733050  T
Q  134 caacattttctctcttct 151  Q
    ||||| ||||||||||||    
T  12733049 caacactttctctcttct 12733032  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 45710129 - 45710025
Alignment:
Q  48 tgattttaataggaaatttttaaattaaccctattttaaaaatctttttagggcatttataggatttcgtaaaccctaacatttttcaacattttctctc 147  Q
    |||||||  ||||||||||| ||||| |||||||||| |||   ||||||| || |||  || || |||||||||||| ||||||||||  |||||||||    
T  45710129 tgattttggtaggaaattttcaaattgaccctatttttaaatcatttttagagctttttgagaatatcgtaaaccctatcatttttcaaatttttctctc 45710030  T
Q  148 ttctc 152  Q
    |||||    
T  45710029 ttctc 45710025  T

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