View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5820-Insertion-1 (Length: 815)
Name: NF5820-Insertion-1
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5820-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 46186222 - 46186651
Alignment:
| Q |
9 |
ctttcgacctccaatcggctttcaactgctttctcaaactttaccataaattattgcaatgttgttgttgcatccacaatagaatatnnnnnnnnnnngc |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46186222 |
ctttcgacctccaatcggctttcaactgctttctcaaactttaccataaattattgcaatgttgttgttgcatccacaatagaat----taaaaaaaagc |
46186317 |
T |
|
| Q |
109 |
attaatactttcggttcttttgagtattattaatgtgcttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacattt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46186318 |
attaatactttcggttcttttgagtattattaatgtgcttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacattt |
46186417 |
T |
|
| Q |
209 |
tcctccaatatgtactcaattatcaagcggttccgctcttcttcaaaactttggacacgagaatctcgaaagcannnnnnnnnnagaccaccttcgaata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46186418 |
tcctccaatatgtactcaattatcaagcggttccactcttcttcaaaactttggacacgagaatctcgaaagca--ttttttttagaccaccttcgaata |
46186515 |
T |
|
| Q |
309 |
tagactttttgtgatatatttgtgctaacttctcaggaaacttctttcttttgtgccaaaagcaaagatgatgttgagtttctggaaatacttttgccac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46186516 |
tagactttttgtgatatatttgtgctaacttctcaggaaacttctttcttatgtgccaaaagcaaagatgatgttgagtttctggaaatacttttgccac |
46186615 |
T |
|
| Q |
409 |
aacagctccaattgctaaatcttgattagttattat |
444 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
46186616 |
aacagctccaattgctaaatcttgattagttattat |
46186651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 480 - 809
Target Start/End: Original strand, 46186675 - 46187001
Alignment:
| Q |
480 |
catatattgcgtcaagccaagttttaaatagctatatgaaagaactatgattcatcttgtaataaaacacaaccaaataaaattgatcgacaatatggtt |
579 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
46186675 |
catacattgcatcaagccaagttttaaatagctatatgaaagaactatgactcatcttgtaataaaacaaaaccaaataaaattgatcgacaatgtggtt |
46186774 |
T |
|
| Q |
580 |
gtgctttattataaggtgagtcggagagttctttatttggttaaaagatgatctcccccacggaatcatgcatcttttttcatataagacaaattttcaa |
679 |
Q |
| |
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||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
46186775 |
gtgctttattacaagatgagtcggagagttctttctttagttaaaagatgatctcccccgcggaatcatgcatc-tttttcatacaagac-aattttcaa |
46186872 |
T |
|
| Q |
680 |
caaggctactgttatcttgattttcttcattcgtagattctttgactttgtggtgaccttcattgcaacacaccaatattgctcnnnnnnnggttaattg |
779 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||| ||| |
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|
| T |
46186873 |
caaggctactgttatcttgattttcttcattcgtagattctgtgactttatggtgaccttcattgcaacacaccaatattgctc-ttttttgtttagttg |
46186971 |
T |
|
| Q |
780 |
aacaaacgtacgtgctccaaaacctctatt |
809 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
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| T |
46186972 |
aacaagcgtacgtgctccaaaacctctatt |
46187001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 11326755 - 11326640
Alignment:
| Q |
145 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacattttcctccaatatgtactcaattatcaagcggttccgc |
244 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| |||| | || | | ||||||||| || || ||| ||| |
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| T |
11326755 |
gcttctattataaactggtatccaagattctctaattttatataacccttgaagccattcattgttgtctagtccgtactcaatcattaatcggctccag |
11326656 |
T |
|
| Q |
245 |
tcttcttcaaaacttt |
260 |
Q |
| |
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|||||||||||||||| |
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|
| T |
11326655 |
tcttcttcaaaacttt |
11326640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 13223272 - 13223334
Alignment:
| Q |
145 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacatt |
207 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| |||| |
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|
| T |
13223272 |
gcttctattataaactggtatccaagattctctaattttatataacccttgaagccattcatt |
13223334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 566
Target Start/End: Original strand, 13223642 - 13223677
Alignment:
| Q |
531 |
tcatcttgtaataaaacacaaccaaataaaattgat |
566 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
13223642 |
tcatcttgtagtaaaacacaaccaaataaaattgat |
13223677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 15272100 - 15272215
Alignment:
| Q |
145 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacattttcctccaatatgtactcaattatcaagcggttccgc |
244 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| |||| | || | | ||||||||| || || ||| ||| |
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| T |
15272100 |
gcttctattataaactggtatccaagattctctaattttatataacccttgaagccattcattgttgtctagtccgtactcaatcattaatcggctccag |
15272199 |
T |
|
| Q |
245 |
tcttcttcaaaacttt |
260 |
Q |
| |
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|||||||||||||||| |
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| T |
15272200 |
tcttcttcaaaacttt |
15272215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 40874925 - 40874810
Alignment:
| Q |
145 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacattttcctccaatatgtactcaattatcaagcggttccgc |
244 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| |||| | || | | ||||||||| || || ||| ||| |
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| T |
40874925 |
gcttctattataaactggtatccaagattctctaattttatataacccttgaagccattcattgttgtctagtccgtactcaatcattaatcggctccag |
40874826 |
T |
|
| Q |
245 |
tcttcttcaaaacttt |
260 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
40874825 |
tcttcttcaaaacttt |
40874810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 5739412 - 5739473
Alignment:
| Q |
146 |
cttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacatt |
207 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || | |||||||||||||||||| |||| |
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|
| T |
5739412 |
cttctattataaaccggtatcaatgattctctgatactatataacccttgaagccattcatt |
5739473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 5776524 - 5776585
Alignment:
| Q |
146 |
cttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacatt |
207 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || | |||||||||||||||||| |||| |
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|
| T |
5776524 |
cttctattataaaccggtatcaatgattctctgatactatataacccttgaagccattcatt |
5776585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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