View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5820-Insertion-2 (Length: 524)
Name: NF5820-Insertion-2
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5820-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 32182860 - 32182405
Alignment:
| Q |
8 |
acattaagaatggcacaaatgaaacatcctttaatctaaaacgatgtaaaataggtgtgcatctttttctttgcttattgattttgatacatcattgcat |
107 |
Q |
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| T |
32182860 |
acattaagaatggccca---gaaacatcctttaatctaaaacgatgtaaaataggtgtgcatctttttctttgcttattgattttgatacatcattgcat |
32182764 |
T |
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| Q |
108 |
caaaagaattttatacattatattctttttcctttttatgaaagatatacatcatcatatttattcagggggaaatttcttttgcgttacaaggataaca |
207 |
Q |
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| T |
32182763 |
caaaagaattttatacattatattctttttcctttttatgaaagatatacatcatcatatttattcagggggaaatttcttttgcgttacaaggataaca |
32182664 |
T |
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| Q |
208 |
cataaccnnnnnnnnnnnnnngataagcaagtatcaatattctcatgatagaaagggcctttaataattcattatgaaaacaaaccctcacaacatccca |
307 |
Q |
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| T |
32182663 |
cataacctttttttgttttttgataagcaagtatcaatattctcatgatagaaagggcctttaataattcattatgaaaacaaaccctcacaacatccca |
32182564 |
T |
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| Q |
308 |
ccacaaaaggagaatagaacgataaggtaagcaagctaaagaaagagtatgatttaaattaaattttgtcacactttctaaatttaatttttcggtctaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182563 |
ccacaaaaggagaatagaacgataaggtaagcaagctaaagaaagagtattatttaaattaaattttgtcacactttctaaatttaatttttcggtctaa |
32182464 |
T |
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| Q |
408 |
agaatggataaattcatggggtggatatttctatagagacgtgatatatatccatgaac |
466 |
Q |
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| T |
32182463 |
agaatggataaattcatggggtggatatttctatagagacgtgatatatatccatgaac |
32182405 |
T |
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