View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5820_high_2 (Length: 247)
Name: NF5820_high_2
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5820_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 27922789 - 27923013
Alignment:
| Q |
13 |
aatatctcatttatccgctgaaattactctctgcaattatatacatgtatacttttttgaatggttaacctttgattgcaattagagatttcctttattg |
112 |
Q |
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| T |
27922789 |
aatatctcatttatccgctgaaattagtctctgcaattatatacatgtatacttttttgaatggttaacctttgattgcaattagagatttcctttattg |
27922888 |
T |
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| Q |
113 |
ttcataaattatac--------aggcaaacatgcaacaaactgcgccgctaaccaaacaaaataagagctttttgcctaatgagatggatatatacgggg |
204 |
Q |
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| T |
27922889 |
ttcataaattatacataaatagaagcaagcatgcaacaaactgcaccgctaaccaaacaaaataagagctttatgcctaatgagatggatatatacgggg |
27922988 |
T |
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| Q |
205 |
acaacaaattcttggccctccatgc |
229 |
Q |
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| T |
27922989 |
acaacaaaatgttggccctccatgc |
27923013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 27923099 - 27923163
Alignment:
| Q |
165 |
aataagagctttttgcctaatgagatggatatatacggggacaacaaattcttggccctccatgc |
229 |
Q |
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| T |
27923099 |
aataagagctttatgcctaatgagatggatatatacggggacaacaaattcttggccctccatgc |
27923163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 27923024 - 27923088
Alignment:
| Q |
165 |
aataagagctttttgcctaatgagatggatatatacggggacaacaaattcttggccctccatgc |
229 |
Q |
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| T |
27923024 |
aataagagctttatgcctaatgagatggatatatacggggacaacaaattgttggccctccatgc |
27923088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 27923174 - 27923202
Alignment:
| Q |
165 |
aataagagctttttgcctaatgagatgga |
193 |
Q |
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| T |
27923174 |
aataagagctttttgcctaatgagatgga |
27923202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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