View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5820_low_3 (Length: 234)
Name: NF5820_low_3
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5820_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27493801 - 27493565
Alignment:
| Q |
1 |
ttttgcaaccatttttcttgctcctgttgcttatttatcagggtactttactataattgatctatctctttcaatgnnnnnnna---attaattcctcaa |
97 |
Q |
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| T |
27493801 |
ttttgcaaccatttttcttgctcctgttgcttatttatcagggtactttactatcattgatctatctctttcattgtttttttttttattaattcctcaa |
27493702 |
T |
|
| Q |
98 |
ttattatattcatccctcttatctaaagtgtattaattaattcattattt---------gtttattttctttttgacaggagaaattctggctcctccca |
188 |
Q |
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| T |
27493701 |
ttattatatccatccctcttatctaaagtgtattaattaattcattatttatttaatttgtttattttcttttttacaggagaaattctggctcctccca |
27493602 |
T |
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| Q |
189 |
ttccttaaatttaaggagtttttcttggatattcatc |
225 |
Q |
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| T |
27493601 |
ttccttaaatttaaagagtttttcttggatattcatc |
27493565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 479570 - 479615
Alignment:
| Q |
3 |
ttgcaaccatttttcttgctcctgttgcttatttatcagggtactt |
48 |
Q |
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| T |
479570 |
ttgcaaccattcttcttgctcctgttgcttatttttccgggtactt |
479615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 446007 - 446069
Alignment:
| Q |
159 |
ttttgacaggagaaattctggctcctcccattccttaaatttaaggagtttttcttggatattcat |
224 |
Q |
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| T |
446007 |
ttttgacaggagaaactctgcctcctac---tccttaaacttaaggagtttttcctggatattcat |
446069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 479694 - 479744
Alignment:
| Q |
161 |
ttgacaggagaaattctggctcctcccattccttaaatttaaggagtttttctt |
214 |
Q |
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| T |
479694 |
ttgataggagaaattctggctctt---attccttaaatttaaggagtttttctt |
479744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 445828 - 445865
Alignment:
| Q |
1 |
ttttgcaaccatttttcttgctcctgttgcttatttat |
38 |
Q |
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| T |
445828 |
ttttgcaaccatttttcttgctccaattgcttatttat |
445865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 474094 - 474139
Alignment:
| Q |
1 |
ttttgcaaccatttttcttgctcctgttgcttatttatcagggtac |
46 |
Q |
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| T |
474094 |
ttttgcaaccatttttcttgctcccattgcttatttctctgggtac |
474139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 454912 - 454956
Alignment:
| Q |
1 |
ttttgcaaccatttttcttgctcctgttgcttatttatcagggta |
45 |
Q |
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| T |
454912 |
ttttgcaaccattcttcttgctcccattgcttatttatctgggta |
454956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 466628 - 466672
Alignment:
| Q |
1 |
ttttgcaaccatttttcttgctcctgttgcttatttatcagggta |
45 |
Q |
| |
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||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
466628 |
ttttgcaaccattgttcttgctcccctcgcttatttatcagggta |
466672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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