View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5820_low_4 (Length: 207)
Name: NF5820_low_4
Description: NF5820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5820_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 6333242 - 6333069
Alignment:
| Q |
18 |
gctttgatgtgctataagagtaaaaacgaactctatcaattgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagt |
117 |
Q |
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| T |
6333242 |
gctttgatgtgctataagagtaaaaatgaaatctatcaattgattccagaaaggatcaagaaagtgtttgagggtcagactcagagtggcgattcggagt |
6333143 |
T |
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| Q |
118 |
tacctgcagttaggtcgattcctatctagagaaattaatttcattttgttgtatgagtttctattttttgtcat |
191 |
Q |
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| T |
6333142 |
tacctgcagttaggtcgattcctatctagagaaattaatttcattttgttgtatgagattctattttttatcat |
6333069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 6325765 - 6325612
Alignment:
| Q |
18 |
gctttgatgtgctataagagtaaaaacgaactctatcaattgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagt |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||| | ||| ||||||| ||| |||| |
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| T |
6325765 |
gctttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaagaaagtttttgagggtaaaactgagagtggtatttccgagt |
6325666 |
T |
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| Q |
118 |
tacctgcagttaggtcgattcctatctagagaaattaatttcattttgttgtat |
171 |
Q |
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| T |
6325665 |
tacctgtagttaggtcgcttcctatataaagaaattaatttcagtgtgttgtat |
6325612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 6346359 - 6346256
Alignment:
| Q |
18 |
gctttgatgtgctataagagtaaaaacgaactctatcaattgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcggagt |
117 |
Q |
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| T |
6346359 |
gctttgatgtgctatgagaataaaaaagaactctatcaaatgattccacaaaggatcaagaatgtttttgagggtgagactcaaagtggcaattcaaagt |
6346260 |
T |
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| Q |
118 |
tacc |
121 |
Q |
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|||| |
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| T |
6346259 |
tacc |
6346256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 6219752 - 6219854
Alignment:
| Q |
19 |
ctttgatgtgctataagagtaaaaacgaactctatcaa---ttgattccagaaaggatcaagaaagtgtctgagggtcagactcagagtggcgattcgga |
115 |
Q |
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|||||||||||||| ||| | ||| || ||||||||| |||||||||||||||||||||||||| | ||||||| ||||||| |||||||||| ||| |
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| T |
6219752 |
ctttgatgtgctatgagaatcgaaaagagctctatcaaatattgattccagaaaggatcaagaaagtttttgagggttagactcatagtggcgattagga |
6219851 |
T |
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| Q |
116 |
gtt |
118 |
Q |
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||| |
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| T |
6219852 |
gtt |
6219854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 6325611 - 6325576
Alignment:
| Q |
156 |
tttcattttgttgtatgagtttctattttttgtcat |
191 |
Q |
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| T |
6325611 |
tttcattttgttgtatgagtttctattttttgtcat |
6325576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 6242905 - 6242966
Alignment:
| Q |
18 |
gctttgatgtgctataagagtaaaaacgaactctatcaattgattccagaaaggatcaagaa |
79 |
Q |
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| T |
6242905 |
gctttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaagaa |
6242966 |
T |
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