View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5821-Insertion-1 (Length: 1072)
Name: NF5821-Insertion-1
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5821-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Original strand, 18677419 - 18677900
Alignment:
| Q |
9 |
aatatcattttcataatcccctcatcttctgcctcttcaatcttcacaccccccatccttcctcttcacaccccctctctcctctttcaatggcttccat |
108 |
Q |
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| T |
18677419 |
aatatcattttcataatcccctcatcttctgcctcttcaatcttcacaccccccctcattcctcttcacaccccctctctcctctttcaatggcttccat |
18677518 |
T |
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| Q |
109 |
tcccgttttctctccattcactcccatgaaacaaaagcataaacctctatctttccaacctctcttacgcacttgctcttccttttcccttcaaagagtc |
208 |
Q |
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| T |
18677519 |
tcccgttttctctccattcactcccatgaaacaaaagcataaacctctatctttccaacctctcttacgcactcgctcttccttttcccttcaaagggtc |
18677618 |
T |
|
| Q |
209 |
tcaaagggttgttcaatatcgagttttgcttgctcaacttcttctaagtttcatggtggaagagttgggtttaaccatagagaagggaaaacttcgtttc |
308 |
Q |
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| T |
18677619 |
tcaaagggttgttcaatatcaagttttgcttgctcaacttct---aagcttcatggtggaagagttgggtttaaccatagagaagggaaaacttcgtttc |
18677715 |
T |
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| Q |
309 |
ttaaatttggtgttgatgaaagtgttgttggtggtggtggtaatggtgatgttggtgaaagagattggtctcagattttgtctgcattgcttcctcttgt |
408 |
Q |
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| T |
18677716 |
ttaaatttggtgttgatgaaagtgttgttggtggtggtggtaatggtgatgttggtgaaagagattggtctcagattttgtctgcattgcttccttttgt |
18677815 |
T |
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| Q |
409 |
tgttgctgttactgctgttgctgctctttctcaaccttccacttttacttggtggggttccttactataatttgcgtgtcttttg |
493 |
Q |
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| T |
18677816 |
tgttgctgttactgctgttgctgctctttctcaaccttccacttttacttggtggggttccttactataatttgcatgtcttttg |
18677900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 569 - 853
Target Start/End: Original strand, 18677976 - 18678256
Alignment:
| Q |
569 |
tcaatgtaactgacagttagtgnnnnnnncttattattctataacccttttgtttagtttatatgtatgtattggacttatgcttgaaaagttgtttttt |
668 |
Q |
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| T |
18677976 |
tcaatgtaactgacagttagtgtttttttcttattattctataacccttttgtttagtttatatgtatgtattggacttatgcttgaaaagttgtttttt |
18678075 |
T |
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| Q |
669 |
attgagattattgggtactgttagttaattactaaatgttgaacacctaactatgaggcacggaccacgtcaaccaccagtaaaatattttgagaaaaat |
768 |
Q |
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| T |
18678076 |
attgagattattgggtactgttagttaattactaaatgttgaacacctaactatgaggcactga-cacgtcaa-cactagtaaaatattttgag-aaaat |
18678172 |
T |
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| Q |
769 |
aacataattcaatataatcacgtgtgtcaatatcagaagtgttggtgataaagggaccccctaggctatcatgtg-ttgattaaag |
853 |
Q |
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| T |
18678173 |
gacataattcaatataatcacgtgtgtcaatgtcagaactg-tggtgataaaggga-cccctaggctatcatgtgtttgattaaag |
18678256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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