View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5821-Insertion-2 (Length: 970)

Name: NF5821-Insertion-2
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5821-Insertion-2
NF5821-Insertion-2
[»] chr1 (26 HSPs)
chr1 (322-911)||(1269992-1270589)
chr1 (15-238)||(1270673-1270896)
chr1 (539-736)||(31032695-31032892)
chr1 (539-736)||(34475903-34476100)
chr1 (549-736)||(29095530-29095717)
chr1 (543-736)||(9098571-9098761)
chr1 (538-736)||(20808951-20809149)
chr1 (538-731)||(16254864-16255056)
chr1 (537-736)||(42480125-42480326)
chr1 (537-736)||(45010204-45010402)
chr1 (541-736)||(47550795-47550990)
chr1 (600-730)||(24135765-24135893)
chr1 (542-731)||(34807945-34808134)
chr1 (540-681)||(44714807-44714948)
chr1 (555-684)||(2958710-2958834)
chr1 (543-610)||(41647357-41647424)
chr1 (615-736)||(4194770-4194891)
chr1 (538-647)||(4624438-4624540)
chr1 (655-736)||(41646580-41646660)
chr1 (672-736)||(7167455-7167519)
chr1 (632-736)||(50663734-50663839)
chr1 (544-586)||(1270175-1270217)
chr1 (544-586)||(4194770-4194812)
chr1 (544-586)||(20808951-20808993)
chr1 (544-586)||(34475903-34475945)
chr1 (383-448)||(1257459-1257524)
[»] chr2 (22 HSPs)
chr2 (537-736)||(13685997-13686196)
chr2 (544-731)||(41464902-41465089)
chr2 (538-732)||(25414922-25415115)
chr2 (538-736)||(28429285-28429480)
chr2 (540-734)||(35323474-35323668)
chr2 (539-722)||(14940985-14941169)
chr2 (541-736)||(42263835-42264030)
chr2 (539-734)||(45093147-45093338)
chr2 (541-708)||(19898951-19899118)
chr2 (557-725)||(3810285-3810453)
chr2 (538-731)||(35676268-35676467)
chr2 (539-736)||(36690817-36691015)
chr2 (540-659)||(28716316-28716435)
chr2 (600-736)||(2752692-2752828)
chr2 (540-736)||(16058375-16058568)
chr2 (598-731)||(29689277-29689407)
chr2 (631-744)||(23454350-23454465)
chr2 (651-736)||(28716449-28716534)
chr2 (561-699)||(40126520-40126658)
chr2 (540-585)||(2752614-2752659)
chr2 (540-581)||(24413862-24413903)
chr2 (544-586)||(13685997-13686039)
[»] chr4 (19 HSPs)
chr4 (541-736)||(24683080-24683275)
chr4 (540-736)||(41633221-41633416)
chr4 (537-736)||(18375387-18375585)
chr4 (541-726)||(37674000-37674185)
chr4 (537-736)||(17847538-17847732)
chr4 (540-682)||(54358170-54358312)
chr4 (540-736)||(23348112-23348312)
chr4 (569-736)||(26179238-26179405)
chr4 (541-664)||(41878592-41878715)
chr4 (597-736)||(47281588-47281731)
chr4 (537-681)||(4512158-4512303)
chr4 (540-701)||(47838942-47839102)
chr4 (540-682)||(54021241-54021386)
chr4 (540-625)||(41497890-41497977)
chr4 (655-729)||(41878332-41878406)
chr4 (539-582)||(52726030-52726073)
chr4 (692-736)||(4098532-4098576)
chr4 (537-575)||(47282226-47282264)
chr4 (544-586)||(24683080-24683122)
[»] chr5 (21 HSPs)
chr5 (538-736)||(32891178-32891376)
chr5 (537-736)||(4391841-4392040)
chr5 (538-736)||(8692512-8692710)
chr5 (542-737)||(37093912-37094107)
chr5 (540-736)||(228027-228223)
chr5 (540-731)||(34286603-34286793)
chr5 (538-719)||(3456773-3456951)
chr5 (540-736)||(5481362-5481552)
chr5 (567-732)||(28434209-28434374)
chr5 (597-736)||(11739275-11739414)
chr5 (597-723)||(38614236-38614365)
chr5 (593-734)||(29223471-29223610)
chr5 (579-736)||(41326486-41326643)
chr5 (560-663)||(40925912-40926015)
chr5 (576-736)||(35672345-35672504)
chr5 (584-661)||(6614289-6614366)
chr5 (556-720)||(31644658-31644812)
chr5 (540-610)||(42148960-42149030)
chr5 (538-584)||(43141517-43141563)
chr5 (596-703)||(16516971-16517078)
chr5 (544-586)||(228027-228069)
[»] chr3 (18 HSPs)
chr3 (538-736)||(50612871-50613069)
chr3 (540-736)||(521763-521959)
chr3 (538-736)||(31788309-31788507)
chr3 (542-736)||(45166230-45166424)
chr3 (538-729)||(23642976-23643167)
chr3 (533-736)||(36517518-36517721)
chr3 (542-736)||(38176390-38176584)
chr3 (569-731)||(1561283-1561445)
chr3 (538-736)||(39145255-39145453)
chr3 (540-745)||(52546736-52546942)
chr3 (538-736)||(51297020-51297219)
chr3 (557-730)||(20912177-20912350)
chr3 (540-736)||(34624486-34624670)
chr3 (596-736)||(22650450-22650590)
chr3 (670-736)||(43203252-43203318)
chr3 (596-703)||(9496567-9496674)
chr3 (686-732)||(544642-544688)
chr3 (544-586)||(50613027-50613069)
[»] chr7 (9 HSPs)
chr7 (539-736)||(23991948-23992145)
chr7 (561-736)||(27425773-27425948)
chr7 (577-736)||(17611846-17612005)
chr7 (597-734)||(22326864-22327001)
chr7 (538-736)||(8307529-8307725)
chr7 (538-680)||(42195437-42195579)
chr7 (540-699)||(25686406-25686563)
chr7 (673-736)||(19479445-19479508)
chr7 (624-731)||(41405797-41405904)
[»] chr6 (8 HSPs)
chr6 (540-734)||(7646773-7646967)
chr6 (554-737)||(25935511-25935694)
chr6 (604-720)||(12607123-12607239)
chr6 (567-734)||(29487541-29487708)
chr6 (661-736)||(17366854-17366929)
chr6 (540-616)||(12607030-12607107)
chr6 (540-589)||(17366968-17367016)
chr6 (614-701)||(29636994-29637081)
[»] chr8 (25 HSPs)
chr8 (538-731)||(29314008-29314201)
chr8 (540-730)||(39112658-39112848)
chr8 (540-736)||(41322533-41322729)
chr8 (540-718)||(36473048-36473226)
chr8 (540-732)||(15561913-15562105)
chr8 (534-737)||(34392111-34392305)
chr8 (538-709)||(2001679-2001849)
chr8 (542-721)||(11653712-11653894)
chr8 (588-736)||(4851737-4851885)
chr8 (604-736)||(8551493-8551625)
chr8 (537-731)||(1005598-1005795)
chr8 (539-642)||(33888946-33889049)
chr8 (540-609)||(37919508-37919577)
chr8 (569-699)||(11643324-11643455)
chr8 (605-711)||(37919603-37919709)
chr8 (538-586)||(4824296-4824344)
chr8 (622-702)||(4794159-4794239)
chr8 (694-736)||(1196511-1196553)
chr8 (539-577)||(13357628-13357666)
chr8 (540-608)||(1416048-1416113)
chr8 (544-586)||(4851737-4851779)
chr8 (544-586)||(34392112-34392154)
chr8 (694-736)||(36473052-36473094)
chr8 (586-703)||(5548972-5549089)
chr8 (663-720)||(33888885-33888942)
[»] scaffold0002 (1 HSPs)
scaffold0002 (541-736)||(492670-492865)
[»] scaffold0132 (2 HSPs)
scaffold0132 (633-732)||(544-642)
scaffold0132 (633-732)||(8504-8602)
[»] scaffold0339 (1 HSPs)
scaffold0339 (537-605)||(13378-13445)


Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 322 - 911
Target Start/End: Complemental strand, 1270589 - 1269992
Alignment:
Q  322 cctcttgttttctatcctggnnnnnnngtgaaacttacatcttttcgcgcacaaaagacacgatatggacggaaaatttctttggtttgttcatcaggtt 421  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1270589 cctcttgttttctatcctgggaaaaaagtgaaacttacatcttttcgcgcacaaaagacacgatatggacggaaaatttctttggtttgttcatcaggtt 1270490  T
Q  422 ctttgcccaccactgaaccctgctcaagcatgctattcatccctgcccctgcatcaagacaaaggcacttcaaatcagtaactttaccatgttgtaacac 521  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1270489 ctttgcccaccactgaaccctgctcaagaatgctattcatccctgcccctgcatcaagacaaaggcacttcaaatcagtaactttaccatgttgtaacac 1270390  T
Q  522 ttcatagatgctttgtaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttattta 621  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1270389 ttcatagatactttgtaaggaaactactatttctctagaaaaatagcatcaaaaatttttcaagacacagttgacaagttttaattgcacgatttattta 1270290  T
Q  622 ttcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttc 721  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  1270289 ttcacttcctatttttcagccacaccttcttgaattgtggcaaatagtgcattgagattggttgctctttattcttgaagaattcttgatgttatttttc 1270190  T
Q  722 tagagatatagcattctctattttgtaaatcataataatactttgtatttcaaaagtcaaaactatgcatttta-tttcctaaacacca--ttcatcttc 818  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  1270189 tagagatatagcattctccactttgtaaatcataataatactttgtatttcaaaagtcaaaactatgcattttattttcctaaacaccaatttcatcttc 1270090  T
Q  819 tgattaagatacatg-ttttatcatg-tagttttatatattcat--ctagtgtataccaatcaaat--atttggttgtatctattatatgtaatctaga 911  Q
    ||||||||||||||| |||||||||| |||||||||||||||||   ||||||||||| |||||||  ||||| ||||||||| |||||||| ||||||    
T  1270089 tgattaagatacatgtttttatcatgttagttttatatattcattcttagtgtatacccatcaaattaatttgtttgtatcta-tatatgtattctaga 1269992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 1270896 - 1270673
Alignment:
Q  15 ctataacaccactatagctgatatttgacaaatcttcataatgtgtggctgcctcaaacataaattttagttggaaatgtatgagatagaagaatacttg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1270896 ctataacaccactatagctgatatttgacaaatcttcataatgtgtggctgcctcaaacataaattttagttggaaatgtatgagatagaagaatacttg 1270797  T
Q  115 agaaaaccatttttgttggaacagcctagaaccaaatgctcaattgctgattgagaagtatattcaattaaagctttggatacatctccatgttctacta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1270796 agaaaaccatttttgttggaacagcctagaaccaaatgctcaattgctgattgagaagtatattcaattaaagctttgcatacatctccatgttctacta 1270697  T
Q  215 caacgtccttgcagtgtacctatc 238  Q
    ||||||||||||||||||||||||    
T  1270696 caacgtccttgcagtgtacctatc 1270673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 539 - 736
Target Start/End: Original strand, 31032695 - 31032892
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31032695 aggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttgttcactttctatttttc 31032794  T
Q  639 agccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||| |||||| |||||||||||||||||||||||||  || |||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  31032795 agccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttattcttgaagaattcttgatgatatttttctagagatataacatt 31032892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 539 - 736
Target Start/End: Complemental strand, 34476100 - 34475903
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||| |||| ||||||| |||||||||    
T  34476100 aggaaaaggctatttctctagaaaaatagtatcaagaatttttcaagacaaagctgacaagttttaattgcatgattgatttgttcacttcctatttttc 34476001  T
Q  639 agccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34476000 agccacacctccttgaattggggcagatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 34475903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 549 - 736
Target Start/End: Original strand, 29095530 - 29095717
Alignment:
Q  549 tatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacacct 648  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| ||| | ||| ||||||| |||||||||||||||||||    
T  29095530 tatttctctagaaaaatagcatcaaaaaattttcaagacatagttgccaagttttaattgcatgatatctttgttcacttcctatttttcagccacacct 29095629  T
Q  649 tcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
     ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  29095630 ccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 29095717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 543 - 736
Target Start/End: Original strand, 9098571 - 9098761
Alignment:
Q  543 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagcc 642  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||  |||| |||||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgttcacttcgtattattcagcc 9098670  T
Q  643 acaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||||   ||||| |||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  9098671 acaccttcttgaa---tggcagatagtgcattgtgattggctgctctttattcttaaagaattcttgatgttatttttctagagatatatcatt 9098761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 20809149 - 20808951
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| || | || |||||||||||| || | ||||||  ||||||| ||| ||||    
T  20809149 aaggaaaattttatttctctagaaaaatagcatcaagaatttttcaagatacgggtggcaagttttaattacatggtttattcgttcacttcctagtttt 20809050  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||| || |||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20809049 cagccacatctccttgaattgtggcaaataatgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 20808951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 538 - 731
Target Start/End: Complemental strand, 16255056 - 16254864
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||  |||||||| | ||||||||| ||||||| ||||| ||    
T  16255056 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaatacacaactgacaaaatttaattgtatgatttatttgttcacttcctattatt 16254957  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||| | |||||||    
T  16254956 cagccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttattcttgaagaattctt-atgttatttttccaaagatata 16254864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 537 - 736
Target Start/End: Complemental strand, 42480326 - 42480125
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaaga--cacagttgacaagttttaattgcacgatttatttattcactttctatt 634  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||    |||||||||||||||  ||||||||||||| ||||||||    
T  42480326 taaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagagacacagcatgcaagttttaattgcataatttatttattcattttctatt 42480227  T
Q  635 tttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagca 734  Q
    ||||||||||||||  ||||||||||| ||||| | |||||| ||||  || | ||||||||||||||||||||||| |||||||| |||||||||| ||    
T  42480226 tttcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattcttgaagaattcttgatgttatttttgtagagatataaca 42480127  T
Q  735 tt 736  Q
    ||    
T  42480126 tt 42480125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 537 - 736
Target Start/End: Complemental strand, 45010402 - 45010204
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||  |||||| ||||||||||| ||||||||| |||||||  ||||||    
T  45010402 taaggaagatgttatttctctagaaaaatagcataaagaatttttcaaaacacatctgacaaattttaattgcatgatttatttgttcacttcttatttt 45010303  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||||| ||||||||| |||||| |||||| |  |||| || ||||||||||| ||||||||||||| |||| ||| |||||||||||||||    
T  45010302 tcagccacaccttc-tgaattgtgacaaataatgcattatatttggatgctctttattcttaaagaattcttgatgttatctttttagagatatagcatt 45010204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 541 - 736
Target Start/End: Complemental strand, 47550990 - 47550795
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||||| | |||| || |||||||| ||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaatttttcaagaaacagctggcaagttttaattgcatgatttatatgttcatttcctattttttag 47550891  T
Q  641 ccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
     ||||||| ||| ||||||||||||||||||||||| ||| | || ||||||||||||||   || || || |||||||| ||||||||| |||||    
T  47550890 tcacacctccttaaattgtggcaaatagtgcattgtaatttgctgctctttattcttgaaatttttttaatgttatttttatagagatattgcatt 47550795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 600 - 730
Target Start/End: Complemental strand, 24135893 - 24135765
Alignment:
Q  600 ttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttga 699  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||| || |||||||||||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttattcttga 24135796  T
Q  700 agaattcttgatcttatttttctagagatat 730  Q
    |||||||||||| |||||||||| |||||||    
T  24135795 agaattcttgatgttatttttcttgagatat 24135765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 542 - 731
Target Start/End: Complemental strand, 34808134 - 34807945
Alignment:
Q  542 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagc 641  Q
    |||||| ||||||| |||||||||||||| |    |||||||||| |||  |  ||||||||||||||| |||||||||||||||||  |||||||||||    
T  34808134 aaaatgttatttctttagaaaaatagcataatttttttttcaagagacaactagcaagttttaattgcatgatttatttattcacttcatatttttcagc 34808035  T
Q  642 cacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||||| ||| |||| ||  ||||||| |||||||||||  || |||||||| |||||||||||||||| ||||||||| |||||||||    
T  34808034 cacacctccttaaattatgataaatagtacattgtgattgactgctctttatttttgaagaattcttgatgttatttttcgagagatata 34807945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 540 - 681
Target Start/End: Original strand, 44714807 - 44714948
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| | ||||||||| || | ||| |||||||||    
T  44714807 ggaaaatgttatttttctagaaaaatagtatcaagaatttttcaagatatagttggcaagttttaattgtatgatttatttttttattttttatttttca 44714906  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattg 681  Q
    |||||| ||  ||||||||||||||||| |||||||||||||    
T  44714907 gccacatctcgttgaattgtggcaaataatgcattgtgattg 44714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 555 - 684
Target Start/End: Original strand, 2958710 - 2958834
Alignment:
Q  555 tctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttga 654  Q
    |||||||||||| |||||||||||||||||||||||| || ||     |||||||| ||||||||| ||||||  ||||||||||||||||||| |||||    
T  2958710 tctagaaaaataacatcaagaatttttcaagacacagctggca-----taattgcatgatttatttgttcactccctatttttcagccacacctccttga 2958804  T
Q  655 attgtggcaaatagtgcattgtgattggtt 684  Q
    ||| ||||||||||||||||||||||||||    
T  2958805 attttggcaaatagtgcattgtgattggtt 2958834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 543 - 610
Target Start/End: Complemental strand, 41647424 - 41647357
Alignment:
Q  543 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgca 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgca 41647357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 615 - 736
Target Start/End: Complemental strand, 4194891 - 4194770
Alignment:
Q  615 ttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatctt 714  Q
    |||||| ||||||| ||||||||||| || | ||  ||||||| ||| |||||||  ||||||||||  |||||||||||||||||||||||||||| ||    
T  4194891 ttatttgttcacttcctatttttcagtcatatctctttgaattatggtaaatagtatattgtgattgactgttctttattcttgaagaattcttgatgtt 4194792  T
Q  715 atttttctagagatatagcatt 736  Q
    ||||||||||||||||||||||    
T  4194791 atttttctagagatatagcatt 4194770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 538 - 647
Target Start/End: Complemental strand, 4624540 - 4624438
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||        ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4624540 aaggaaaatgctatttctctagaaaaatagcatcaagaattattcaagac-------tcaagttttaattgcatgatttatttgttcacttcctattttt 4624448  T
Q  638 cagccacacc 647  Q
    ||||||||||    
T  4624447 cagccacacc 4624438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 655 - 736
Target Start/End: Complemental strand, 41646660 - 41646580
Alignment:
Q  655 attgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  41646660 attgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattc-tgatgttatttttctagagatacagcatt 41646580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 672 - 736
Target Start/End: Original strand, 7167455 - 7167519
Alignment:
Q  672 attgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||||  |||||||||||||||||||||||||||  |||||||| |||| ||||||||||    
T  7167455 attgtgattgactgttctttattcttgaagaattcttgacgttatttttttagaaatatagcatt 7167519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 632 - 736
Target Start/End: Complemental strand, 50663839 - 50663734
Alignment:
Q  632 atttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatctta-tttttctagagatat 730  Q
    ||||||||| ||||| | |||||||||||| ||||| |||||| | |||   || |||||||||||| | |||| ||||| ||| ||||| |||||||||    
T  50663839 atttttcagtcacacgtccttgaattgtggtaaataatgcattatcattcactgctctttattcttgtaaaatttttgatgttattttttttagagatat 50663740  T
Q  731 agcatt 736  Q
    ||||||    
T  50663739 agcatt 50663734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 1270175 - 1270217
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaaga 1270217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 4194770 - 4194812
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  4194770 aatgctatatctctagaaaaataacatcaagaattcttcaaga 4194812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 20808951 - 20808993
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  20808951 aatgctatatctctagaaaaataacatcaagaattcttcaaga 20808993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 34475903 - 34475945
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  34475903 aatgctatatctctagaaaaataacatcaagaattcttcaaga 34475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 1257524 - 1257459
Alignment:
Q  383 gatatggacggaaaatttctttggtttgttcatcaggttctttgcccaccactgaaccctgctcaa 448  Q
    ||||| |||| || ||||||||||||||||||| ||| | ||||| ||||| |||||||| |||||    
T  1257524 gatatagacgaaacatttctttggtttgttcattaggctttttgcacaccagtgaaccctcctcaa 1257459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 5e-80; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 537 - 736
Target Start/End: Complemental strand, 13686196 - 13685997
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||| |||||||    
T  13686196 taaggaaaatgctatttctctagaaaaatagcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttgttcacttcctatttt 13686097  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  13686096 tcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaaaaattcttgatgttatttttctagagatatagcatt 13685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 544 - 731
Target Start/End: Original strand, 41464902 - 41465089
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagcca 643  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||    
T  41464902 aatgttatttctctagaaaaataacatcaagaatttttcaagacacagttgacaagttttaattgcatgatttatttgttcactttctatttttcaacca 41465001  T
Q  644 caccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||| ||||||||| ||||||||||||||||||||  | ||  |||||||||||||||||||||||| |||||||||||||||||||    
T  41465002 cacctccttgaattgcggcaaatagtgcattgtgatccgctgcactttattcttgaagaattcttgatgttatttttctagagatata 41465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 538 - 732
Target Start/End: Complemental strand, 25415115 - 25414922
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||| |||||    
T  25415115 aaggaaaatgctatatctctagaaaaatagtataaagaatttttcaagacacagctgataagttttaattgcatgatttatttgttcactttcttttttt 25415016  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    |||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  25415015 cagccatacctccttgaattgtggcaaatagtgcattgtgattgactgttctttattcttgaagaattcttgatgtta-ttttctagatatatag 25414922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 28429480 - 28429285
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||   |||||||||||||||||| ||||||||| |||||||  |||||||    
T  28429480 aaggaaaatgctatttctttagaaaaatagcatcaagaatttttcatgacac---tgacaagttttaattgcatgatttatttgttcacttcttattttt 28429384  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||| ||||||| ||| |||| ||||||||| ||||||||| |||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  28429383 cagtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattcttgaagaattcttgatattatttttctaaagatatagcatt 28429285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 540 - 734
Target Start/End: Original strand, 35323474 - 35323668
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||| ||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||| || ||||||| | |||| ||| |||||||||    
T  35323474 ggaaaatgttatttctctagaaaaatagtattaagaattttttcagacacagttgacaagttttaattacatgatttatatgttcagtttttatttttca 35323573  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagca 734  Q
    |||||||||  |||||||||||||||||||| ||||||||||  |||||||||||||||||||||| ||||| ||||||||||| | ||||||||    
T  35323574 gccacacctcattgaattgtggcaaatagtgtattgtgattgactgttctttattcttgaagaatttttgatgttatttttctataaatatagca 35323668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 539 - 722
Target Start/End: Original strand, 14940985 - 14941169
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| || ||||||||| |||||||  ||||||||    
T  14940985 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaatttcatgatttatttgttcacttcttatttttc 14941084  T
Q  639 -agccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttct 722  Q
     || |||||||  |||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||||| ||||||||||    
T  14941085 gagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattattgatgttatttttct 14941169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 541 - 736
Target Start/End: Complemental strand, 42264030 - 42263835
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    ||||||| |||||||||| |||||||||||||| | |||||||||||||    | |||||||||||||||  |||||||| |||| || |||||||||||    
T  42264030 gaaaatgttatttctctaaaaaaatagcatcaaaattttttcaagacacgacagtcaagttttaattgcataatttatttgttcatttcctatttttcag 42263931  T
Q  641 ccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||| ||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  42263930 ccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 42263835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 539 - 734
Target Start/End: Original strand, 45093147 - 45093338
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||  || ||||||||||| |||||| || || |||| |||||||||    
T  45093147 aggaaaatgttatttctctagaaaaatagcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgtttacttcctatttttc 45093246  T
Q  639 agccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagca 734  Q
    || || |||| |||||||||||||||||||||||||||||    ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45093247 agtcatacctccttgaattgtggcaaatagtgcattgtga----ttgctctttattcttgaagaattattgatgttatttttctagagatatagca 45093338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 541 - 708
Target Start/End: Complemental strand, 19899118 - 19898951
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  || ||||||||||||||| ||||||||| ||||||| ||| |||||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctaattttcag 19899019  T
Q  641 ccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattctt 708  Q
    | | |||| ||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||    
T  19899018 caatacctccttgaattgtgacaaataatgcattgtgattggctgctctttattcttgaagaattctt 19898951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 557 - 725
Target Start/End: Original strand, 3810285 - 3810453
Alignment:
Q  557 tagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaat 656  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||| |||||||  |||||||||| ||||||| |||||||    
T  3810285 tagaaaaatagcatcaagaaattttcaagacacagctggcaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttgaat 3810384  T
Q  657 tgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctaga 725  Q
    |||||||||||||||||||| ||||| |  ||||||||||||||||||| || || |||||||||||||    
T  3810385 tgtggcaaatagtgcattgtaattggctactctttattcttgaagaattattaatgttatttttctaga 3810453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 538 - 731
Target Start/End: Original strand, 35676268 - 35676467
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattg--cacg----atttatttattcactttct 631  Q
    |||||||||||||||||||||||||||||||||||||| |||||  |||||||  || |||||||||||||  |||     |||||||| |||||||  |    
T  35676268 aaggaaaatgctatttctctagaaaaatagcatcaagattttttttagacacaactggcaagttttaattgttcacttcatatttatttgttcacttcat 35676367  T
Q  632 atttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||  || ||||||||||| ||||||||||||| |||||||| ||||||||||    
T  35676368 atttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctttattcttaaagaattcttgatgttatttttttagagatata 35676467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 539 - 736
Target Start/End: Original strand, 36690817 - 36691015
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaat--ttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    ||||||||||||||||| |||||||||| ||| ||||||  |||||||||||||| |||||| |||||||| |  ||||||||| ||||||| ||| |||    
T  36690817 aggaaaatgctatttctttagaaaaataacattaagaatatttttcaagacacagctgacaaattttaattacttgatttatttgttcacttcctacttt 36690916  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
     ||||||| | | |||||||||||||||||| || ||| | ||||| |||| |||||| |||||||||| ||||| |||| ||| |||||||||| ||||    
T  36690917 -cagccacgcttccttgaattgtggcaaatactgtattataattggatgttttttatttttgaagaatttttgatgttatatttttagagatataacatt 36691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 540 - 659
Target Start/End: Original strand, 28716316 - 28716435
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||  || |||||||||||||||  |||||||| ||||||| ||||||||||    
T  28716316 ggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcattatttatttgttcacttcctatttttca 28716415  T
Q  640 gccacaccttcttgaattgt 659  Q
    |||||||||  |||||||||    
T  28716416 gccacacctctttgaattgt 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 600 - 736
Target Start/End: Original strand, 2752692 - 2752828
Alignment:
Q  600 ttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttga 699  Q
    ||||||||| | |||||||||||||||||  |||||||||| || | || ||||||||||||||||||||||||||||||||| || | ||| |||||||    
T  2752692 ttttaattgtatgatttatttattcacttcttatttttcagtcagatctccttgaattgtggcaaatagtgcattgtgattggctgctattttttcttga 2752791  T
Q  700 agaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||| || ||||||||||||| ||||| ||||    
T  2752792 agaattcttaatgttatttttctagaaatatatcatt 2752828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 540 - 736
Target Start/End: Original strand, 16058375 - 16058568
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttc-aagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    |||||||  |||||||||| ||||||||||||||||||||||  ||||||||    |||||||||| ||||| |||||||||||||||||  ||||||||    
T  16058375 ggaaaatcttatttctcta-aaaaatagcatcaagaatttttttaagacaca----acaagttttatttgcatgatttatttattcacttcatatttttc 16058469  T
Q  639 agccacac--cttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||  || ||||||||||| ||||| || |||| | || |  |  |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  16058470 agccacacaactccttgaattgtgacaaat-gttcattattatagactactctttattcttgaagaattcttaatgttatttttctagagatatagcatt 16058568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 598 - 731
Target Start/End: Original strand, 29689277 - 29689407
Alignment:
Q  598 agttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattctt 697  Q
    ||||||||||||| ||||||||  ||||||| ||||||||||| || |||| |||||||| | |||||||||||||||||||   ||| |||||||||||    
T  29689277 agttttaattgcatgatttattagttcacttcctatttttcagtcaaacctccttgaattatagcaaatagtgcattgtgat---ttgctctttattctt 29689373  T
Q  698 gaagaattcttgatcttatttttctagagatata 731  Q
     || |||||||||| |||||||||||||||||||    
T  29689374 aaaaaattcttgatgttatttttctagagatata 29689407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 631 - 744
Target Start/End: Original strand, 23454350 - 23454465
Alignment:
Q  631 tatttttcagccacaccttcttgaattgtggcaaat-agtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagata 729  Q
    |||||||||| | ||||| ||||||||||| ||||| |||||||||||||||  || ||||||||||||||||||| || || |||||||||||||||||    
T  23454350 tatttttcagtcgcacctccttgaattgtgtcaaattagtgcattgtgattgactgctctttattcttgaagaattttttatgttatttttctagagata 23454449  T
Q  730 tagcatt-ctctattt 744  Q
    ||||||| ||||||||    
T  23454450 tagcattactctattt 23454465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 651 - 736
Target Start/End: Original strand, 28716449 - 28716534
Alignment:
Q  651 ttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||||||||||||||||||||||| || |  | ||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  28716449 ttgaattgtggcaaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgtcatttttctagagatataacatt 28716534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 561 - 699
Target Start/End: Original strand, 40126520 - 40126658
Alignment:
Q  561 aaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtg 660  Q
    ||||||||||| ||||||||| |||| |||| | |||| ||||||||| | ||||||||| ||||||| |||||||||| | | | |||||| |||||||    
T  40126520 aaaatagcatcgagaattttttaagatacagctcacaaattttaattgtatgatttatttgttcacttcctatttttcaactatatcttcttaaattgtg 40126619  T
Q  661 gcaaatagtgcattgtgattggttgttctttattcttga 699  Q
      |||||||||||| ||| ||  || |||||||||||||    
T  40126620 ataaatagtgcattatgaatgactgctctttattcttga 40126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 2752614 - 2752659
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaag 585  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaatttttcaag 2752659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 540 - 581
Target Start/End: Complemental strand, 24413903 - 24413862
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaattttt 581  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataattttt 24413862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 13685997 - 13686039
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  13685997 aatgctatatctctagaaaaataacatcaagaatttttcaaga 13686039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 3e-75; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 541 - 736
Target Start/End: Complemental strand, 24683275 - 24683080
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||| |||||||||||    
T  24683275 gaaaatgttatttctttagaaaaatagtatcaagaatttttcaagacacacttgataagttttaattgcatgatttatttgttcacttcctatttttcag 24683176  T
Q  641 ccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
     ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24683175 tcacaccttcctgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 24683080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 540 - 736
Target Start/End: Complemental strand, 41633416 - 41633221
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| ||  |||||||| ||||||| ||||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacaaagctgacaaattttaattacat-atttatttgttcacttcctatttttca 41633318  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  41633317 gccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacatt 41633221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 537 - 736
Target Start/End: Original strand, 18375387 - 18375585
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||| ||||||| ||| |||    
T  18375387 taaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttccta-ttt 18375485  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||| ||||||||||||||||||||||||||||||||   |  |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  18375486 tcagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattcttgaagaattcttgatgttatttttctagagatataacatt 18375585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 541 - 726
Target Start/End: Original strand, 37674000 - 37674185
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaatttttcaagacacgtgtgacaagttttaattgcatgatttatttgttaactttttatttttcag 37674099  T
Q  641 ccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagag 726  Q
    ||||||||  ||||||||| | ||||||| |||||||||||  || |||||| |||||||||||||||||| ||||||||||||||    
T  37674100 ccacacctctttgaattgtagtaaatagtacattgtgattgactgctctttagtcttgaagaattcttgatgttatttttctagag 37674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 537 - 736
Target Start/End: Original strand, 17847538 - 17847732
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  17847538 taaggaaaatgttatttctctcgaaaaatagcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcactttctatttt 17847637  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    || | ||||||| |||||||||||||     ||||||| ||||||  || | |||| |||||||||||| || || ||||||||||||||||||||||||    
T  17847638 tctgtcacacctccttgaattgtggc-----gtgcattatgattgactgctttttaatcttgaagaattttttatgttatttttctagagatatagcatt 17847732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 540 - 682
Target Start/End: Complemental strand, 54358312 - 54358170
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttgttcacttcctatttttca 54358213  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattgg 682  Q
    ||||||||  ||| |||||||||||||||||||||||||||||    
T  54358212 gccacacccccttaaattgtggcaaatagtgcattgtgattgg 54358170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 540 - 736
Target Start/End: Original strand, 23348112 - 23348312
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcact---ttctatttt 636  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||   ||||||||||||||||| ||||||||| ||||||   | |||||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataatttttcaagaaacaaccgacaagttttaattgcatgatttatttgttcacttcctcctatttt 23348211  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatctta-tttttctagagatatagcat 735  Q
    |||||||||||| |||||||| ||| |||||||| ||||||||||  |||||||||||||| ||||||| ||||| ||| ||||| || |||||||||||    
T  23348212 tcagccacacctccttgaattatggtaaatagtgtattgtgattgagtgttctttattcttaaagaattattgatgttattttttttaaagatatagcat 23348311  T
Q  736 t 736  Q
    |    
T  23348312 t 23348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 569 - 736
Target Start/End: Original strand, 26179238 - 26179405
Alignment:
Q  569 atcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatag 668  Q
    ||||||||||||| || |||||| || ||||||| ||||  | ||||||||| ||||||| ||||||||||||||||||| |||||||||||  ||||||    
T  26179238 atcaagaattttttaaaacacagctgtcaagtttcaatttgatgatttatttgttcacttcctatttttcagccacacctccttgaattgtgttaaatag 26179337  T
Q  669 tgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||| ||||||||| || |||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  26179338 tgcactgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacatt 26179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 541 - 664
Target Start/End: Complemental strand, 41878715 - 41878592
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |  |||||||||||||||||| ||||||||| || |||| |||||||||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaatttttcaagacataactgacaagttttaattgcatgatttatttgtttacttcctatttttcag 41878616  T
Q  641 ccacaccttcttgaattgtggcaa 664  Q
    ||||||||| ||||||||||||||    
T  41878615 ccacaccttattgaattgtggcaa 41878592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 597 - 736
Target Start/End: Original strand, 47281588 - 47281731
Alignment:
Q  597 aagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaatt----gtggcaaatagtgcattgtgattggttgttcttta 692  Q
    |||||||||||||| ||||||||| ||||||| |||||||||| |||||||| |||||| |    ||||||||||||||||||||||| || ||||||||    
T  47281588 aagttttaattgcatgatttatttgttcacttcctatttttcaaccacacctccttgaaattaatgtggcaaatagtgcattgtgatttgtcgttcttta 47281687  T
Q  693 ttcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  47281688 ttcttgaagaattcttgatgttatttttctagacatataacatt 47281731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 537 - 681
Target Start/End: Original strand, 4512158 - 4512303
Alignment:
Q  537 taaggaaaatgctatttctctagaaaa-atagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattt 635  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||| || |||||||||||||||  |||||||| || |||| ||||||    
T  4512158 taaggaaaatgttatttctctagaaaaaatagcatcaagaatttttcaatactcaggtggcaagttttaattgcatcatttatttgtttacttcctattt 4512257  T
Q  636 ttcagccacaccttcttgaattgtggcaaatagtgcattgtgattg 681  Q
    ||||| |||| || ||||||||||||||||||||  ||||||||||    
T  4512258 ttcagtcacatctccttgaattgtggcaaatagtatattgtgattg 4512303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 540 - 701
Target Start/End: Original strand, 47838942 - 47839102
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||   || |||||||||| ||| | ||| |||| ||||||||||||     
T  47838942 ggaacatgctatttctctataaaaatagcatcaagaatttt-caagacacagctggtgagatttaattgcatgatgtttttgttcattttctatttttcg 47839040  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaag 701  Q
    ||||||||| ||| |||||||||||||||| ||||||| |||  || |||||||||||||||    
T  47839041 gccacacctccttaaattgtggcaaatagtacattgtggttgactgctctttattcttgaag 47839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 540 - 682
Target Start/End: Original strand, 54021241 - 54021386
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaa---ttgcacgatttatttattcactttctatttt 636  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| | || |||||||||||||   ||    | ||||||| || ||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagataaagctgacaagttttaatttttaattgctttatttgtttactttctatttt 54021340  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattgg 682  Q
    ||| |||||||| ||| |||||||||| ||||||||||||||||||    
T  54021341 tcaaccacacctccttaaattgtggcacatagtgcattgtgattgg 54021386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 540 - 625
Target Start/End: Original strand, 41497890 - 41497977
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaag--acacagttgacaagttttaattgcacgatttatttattca 625  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||  |||||||||| |||||||||||||| ||||||||| ||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaaaaattattcaagacacacagttgataagttttaattgcatgatttatttgttca 41497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 655 - 729
Target Start/End: Complemental strand, 41878406 - 41878332
Alignment:
Q  655 attgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagata 729  Q
    ||||| |||||||||||||||||||||| || ||||||||| |||||||||| |||| ||||||||||| |||||    
T  41878406 attgtagcaaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgttatttttctatagata 41878332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 539 - 582
Target Start/End: Complemental strand, 52726073 - 52726030
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  52726073 aggaaaatgctatttctctagaaaaatagcatcaagaatttttc 52726030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 736
Target Start/End: Original strand, 4098532 - 4098576
Alignment:
Q  692 attcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatataacatt 4098576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 47282264 - 47282226
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaaga 575  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  47282264 taagaaaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 24683080 - 24683122
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  24683080 aatgctatatctctagaaaaataacatcaagaattcttcaaga 24683122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 1e-74; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 32891376 - 32891178
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||| |||    
T  32891376 aaggaaaatgctatttatctagaaaaatagcatcaacaatttttcaagacacagttgacaaattttaattgcatgatttatttgttcacttcctatcttt 32891277  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
     |||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  32891276 tagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctttttattcttgaagaattcttgatgttatttttctagagatataacatt 32891178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 537 - 736
Target Start/End: Original strand, 4391841 - 4392040
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||| ||||||| |||||||    
T  4391841 taaggaaaatgcaatttctctagaaaaatagcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttgttcacttcctatttt 4391940  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||| || |||||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  4391941 tcagccacagctccttgaattgtggcaaacagtgcattgtaattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 4392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 8692710 - 8692512
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  8692710 aaggaaaatgttatttctctaaaaaaatagcatcaagaatctttcaagacacagctgacaaattttaattgcatgatttatttattcactttctattttt 8692611  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    | ||||||| | |||||||||||||||||||| |||| ||||||| || | ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8692610 ctgccacacttccttgaattgtggcaaatagtacattatgattggatgctatttattcttgaagaattcttgatgttatttttctagagatataacatt 8692512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 542 - 737
Target Start/End: Original strand, 37093912 - 37094107
Alignment:
Q  542 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagc 641  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||     
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttgttcacttcctatttttcagt 37094011  T
Q  642 cacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcattc 737  Q
    ||||||| |||||||||| ||||||||| || ||||||||  || ||||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  37094012 cacacctccttgaattgttgcaaatagtacaatgtgattgactgctctttattcttgaagaattgttgatgttatttttctagagatataacattc 37094107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 540 - 736
Target Start/End: Complemental strand, 228223 - 228027
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||||||||| |||||||||||| ||| || | ||||||||||||||  | |||||||||||||||| ||| ||||| ||||||||||| ||||||    
T  228223 ggaaaatgctatttttctagaaaaataacattaaaattttttcaagacacaacttacaagttttaattgcatgatatatttgttcactttctacttttca 228124  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    | ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  228123 gtcacacctccttgaattgtggtaaatagtgcattgtgattgattgttctttattcttgaaaaattcttgatgttatttttctagagatatatcatt 228027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 540 - 731
Target Start/End: Complemental strand, 34286793 - 34286603
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||||||||  |||||| ||||||||||| ||||||||| |||| || ||||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaaaattttttcaagacacaactgacaaattttaattgcatgatttatttgttcatttcctatttttca 34286694  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||||||||| | |||||||||||||||||||| |||||||| || | |||||||||||| |||| ||||| |||||||| ||||||||||    
T  34286693 gccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttgaataattattgatgttatttttttagagatata 34286603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 538 - 719
Target Start/End: Complemental strand, 3456951 - 3456773
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||||||||| |||||||||||||||||||||||||||   ||||||   ||||||||||||||||| ||||||||| ||||||| ||||||||    
T  3456951 aaggaaaatgctatttttctagaaaaatagcatcaagaattttt---gacacaaccgacaagttttaattgcatgatttatttgttcacttcctattttt 3456855  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttt 719  Q
    ||| ||||||| ||||||||||||||||||||||||||||| ||  || |||||||||||||||||||| | || |||||||    
T  3456854 cagtcacacctccttgaattgtggcaaatagtgcattgtgagtgactgctctttattcttgaagaattcgtaatgttatttt 3456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 540 - 736
Target Start/End: Complemental strand, 5481552 - 5481362
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||||||  || |||||| |||| ||||||||| |||||||| |||||||||    
T  5481552 ggaaaatattatttctctagaaaaatagcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttgttcactttttatttttca 5481453  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||| ||   |||||||||||||||| |||||||||| |||      ||||||||| ||||||| ||||| |||||||||||| |||||||||||    
T  5481452 gccacatctctatgaattgtggcaaataatgcattgtgaatgg------tttattcttaaagaatttttgatattatttttctagtgatatagcatt 5481362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 567 - 732
Target Start/End: Complemental strand, 28434374 - 28434209
Alignment:
Q  567 gcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaat 666  Q
    |||||||||||||||  ||| ||||||  | ||||||||||||| |||||||||||||| |||||||||| ||| |||| |||||| |||||||| ||||    
T  28434374 gcatcaagaatttttttagatacagttagcgagttttaattgcatgatttatttattcattttctattttacagtcacatcttcttaaattgtggtaaat 28434275  T
Q  667 agtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    |||||||||| ||||| || |||||||| || |||||||||  || ||||||||||||||||||||    
T  28434274 agtgcattgtaattggctgctctttatttttaaagaattctcaatgttatttttctagagatatag 28434209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 597 - 736
Target Start/End: Original strand, 11739275 - 11739414
Alignment:
Q  597 aagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattct 696  Q
    ||||||||||||||  |||||||| ||||| | ||||||||||||||||||| |||||||||||||||| |||||||| |||||   || | ||||||||    
T  11739275 aagttttaattgcataatttatttgttcacctcctatttttcagccacacctccttgaattgtggcaaacagtgcattatgattacctgctttttattct 11739374  T
Q  697 tgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||||||||| ||||||||||| ||||||| ||||    
T  11739375 tgaagaattcttgatgttatttttctaaagatataacatt 11739414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 597 - 723
Target Start/End: Original strand, 38614236 - 38614365
Alignment:
Q  597 aagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattct 696  Q
    |||||||||||||| ||||||||| || |||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||  | ||||||||||    
T  38614236 aagttttaattgcatgatttatttgtttacttcctatttttcagccacatcttcttgaattgtggcaattagtgcattgtgattgggcgctctttattct 38614335  T
Q  697 t---gaagaattcttgatcttatttttcta 723  Q
    |   |||||||||||||| |||||||||||    
T  38614336 tgaagaagaattcttgatgttatttttcta 38614365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 593 - 734
Target Start/End: Complemental strand, 29223610 - 29223471
Alignment:
Q  593 tgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttcttta 692  Q
    |||||||||||||||||| ||||||||| | |||||  |||||||||| ||||||| |||||||||||||||||||||||||||| |||  || || |||    
T  29223610 tgacaagttttaattgcatgatttatttgtacacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctc-tta 29223512  T
Q  693 ttcttgaagaattcttgatcttatttttctagagatatagca 734  Q
    || |||||||||||||||| ||||||||||| ||||||||||    
T  29223511 tt-ttgaagaattcttgatattatttttctaaagatatagca 29223471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 579 - 736
Target Start/End: Original strand, 41326486 - 41326643
Alignment:
Q  579 tttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtga 678  Q
    |||| ||| ||||||| ||||| || ||||||   | ||||| || |||| ||||||||||||||||||| ||||||||||| |||||||  ||||||||    
T  41326486 tttctagatacagttggcaagtgtttattgcatcgtgtatttgtttacttcctatttttcagccacacctccttgaattgtgtcaaatagcacattgtga 41326585  T
Q  679 ttggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||| || ||||||||||||||||  || |||| ||||||||||||||||||||||||    
T  41326586 ttggctgctctttattcttgaagagatcgtgatgttatttttctagagatatagcatt 41326643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 560 - 663
Target Start/End: Complemental strand, 40926015 - 40925912
Alignment:
Q  560 aaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgt 659  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||  |||||||||    
T  40926015 aaaagtagcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctctttgaattgt 40925916  T
Q  660 ggca 663  Q
    ||||    
T  40925915 ggca 40925912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 576 - 736
Target Start/End: Original strand, 35672345 - 35672504
Alignment:
Q  576 atttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattg 675  Q
    |||||| ||||||||||||| || ||||||||||| ||||||||| ||||||| ||||| || | | |||  | ||| ||||| |  |||||||||||||    
T  35672345 atttttgaagacacagttgataaattttaattgcatgatttatttgttcacttcctattgttta-caacatttccttaaattgcgataaatagtgcattg 35672443  T
Q  676 tgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||  || |||||||||||||| ||||||| || ||||||||||||| ||||| ||||    
T  35672444 tgattgactgctctttattcttgaaaaattcttaatgttatttttctagaaatataacatt 35672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 584 - 661
Target Start/End: Original strand, 6614289 - 6614366
Alignment:
Q  584 agacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtgg 661  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||||||||||    
T  6614289 agacacagtcgacaagttttaattgcatgatttatttgttcacttcctatttttcaggcacacctccttgaattgtgg 6614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 556 - 720
Target Start/End: Complemental strand, 31644812 - 31644658
Alignment:
Q  556 ctagaaaaatagcatcaagaatttttcaagacacag--ttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttg 653  Q
    |||||||||||| |||||||||||| |||||||||   |||  |||||||||||||| | ||||||| ||||||| |||||||||| ||||| |          
T  31644812 ctagaaaaatagtatcaagaattttgcaagacacacaattggtaagttttaattgcatggtttatttgttcacttcctatttttcaaccacatc------ 31644719  T
Q  654 aattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttattttt 720  Q
          || |||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||    
T  31644718 ------ggtaaatagtgcattgtgattggctgctctttattcttgaagaattattgatgttattttt 31644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 610
Target Start/End: Complemental strand, 42149030 - 42148960
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgca 610  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||  ||| || |||||||||||    
T  42149030 ggaaaacgctatttctctagaaaaatagtatcaagaatttttcaagacacaactgataaattttaattgca 42148960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 584
Target Start/End: Original strand, 43141517 - 43141563
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 584  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  43141517 aaggaaaatgttatttctctagaaaaatagcatcaagaattcttcaa 43141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 703
Target Start/End: Original strand, 16516971 - 16517078
Alignment:
Q  596 caagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattc 695  Q
    |||||||||||| || ||||||||| |||||| |||||| |||||| ||| || | || ||||| ||||  |||| ||| ||||||  || |||||||||    
T  16516971 caagttttaatttcatgatttatttgttcactctctattattcagcaacatctccgtgtattgttgcaagcagtgaattatgattgactgctctttattc 16517070  T
Q  696 ttgaagaa 703  Q
    || |||||    
T  16517071 ttaaagaa 16517078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 228027 - 228069
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  228027 aatgatatatctctagaaaaataacatcaagaatttttcaaga 228069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 1e-74; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 538 - 736
Target Start/End: Original strand, 50612871 - 50613069
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||  |||||||| |||||||| |||||||    
T  50612871 aaggaaaatgttatttctctataaaaacagcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttgttcactttatattttt 50612970  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50612971 cagtcacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 50613069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 540 - 736
Target Start/End: Original strand, 521763 - 521959
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||||||||| |||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  521763 ggaaaatgctatttatctagacaaatatcatcaagaattttttaagacacagttgtcaagttttaattgcatgatttatttgttcacttcctatttttca 521862  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  521863 gccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttatctagatatatagcatt 521959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 31788507 - 31788309
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||| |||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||||||    
T  31788507 aaggaaaatgttatttctctataaaaataacttcaagaatttttcaagacacaattgacaagttttaactgcaagatttatttgttcacttcctattttt 31788408  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||  ||||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  31788407 caatcacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatatcatt 31788309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 542 - 736
Target Start/End: Complemental strand, 45166424 - 45166230
Alignment:
Q  542 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagc 641  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| | ||||  ||||||||||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgtccactccctatttttcagc 45166325  T
Q  642 cacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||| ||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  45166324 cacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttattattgaagaattcttgatgttatttttctagagatataacatt 45166230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 538 - 729
Target Start/End: Original strand, 23642976 - 23643167
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||  |||||||| ||||||| ||||||||    
T  23642976 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttgttcacttcctattttt 23643075  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagata 729  Q
     || ||||||| ||||||||||||||||||||||||||||||||  |  | ||||||||||||||||||||||| |||||||||||||||||    
T  23643076 tagtcacacctccttgaattgtggcaaatagtgcattgtgattgactaatatttattcttgaagaattcttgatgttatttttctagagata 23643167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 533 - 736
Target Start/End: Complemental strand, 36517721 - 36517518
Alignment:
Q  533 tttgtaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttcta 632  Q
    ||||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||| |||    
T  36517721 tttgtaaggaaaatgctatttatctagataaataacttcaagaatttttcaaaacacagttggcaagttttaattgcatgatttatttgttcacttccta 36517622  T
Q  633 tttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    ||||| |  ||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||| |||||| ||||||    
T  36517621 ttttttattcacacctccttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttgtctagatatatag 36517522  T
Q  733 catt 736  Q
    ||||    
T  36517521 catt 36517518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 542 - 736
Target Start/End: Original strand, 38176390 - 38176584
Alignment:
Q  542 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagc 641  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||  |||||||||||    
T  38176390 aaaatgatatttctttagaaaaatagcattaagaatttttcaagacacagttggcaagttttaattgcatgttttatttgttcacttcatatttttcagc 38176489  T
Q  642 cacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||| ||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  38176490 cacacctccttgaattgaggcaaatagtgcattgcgattggctgctctttattcttgaagaattcttgatgatatttttctagagatataacatt 38176584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 569 - 731
Target Start/End: Original strand, 1561283 - 1561445
Alignment:
Q  569 atcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatag 668  Q
    |||||||||||||  |||||||| |||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  1561283 atcaagaattttttcagacacagctgacaagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatag 1561382  T
Q  669 tgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  1561383 tgcattgtgattggttgctctttattcttgaagaattcttgatgttatttttctagagatata 1561445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 39145453 - 39145255
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| ||| |||| || ||||||||    
T  39145453 aaggaaaatgctatttctctagaaaaatagcatcaagaatttgtcaagacacagttgtcaagttttaattgtatgatttctttgttcatttcctattttt 39145354  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||| || ||||  ||||||||| |||||||||||||||| ||||| || | ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  39145353 cagtcatacctcattgaattgtagcaaatagtgcattgtaattggctgctttttattcttaaagaattcttgatattatttttctagagatatagcatt 39145255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 540 - 745
Target Start/End: Complemental strand, 52546942 - 52546736
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||  | ||||||||||||||||  |||||||| |||| || ||||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaattttccaagacacaccttacaagttttaattgcataatttatttgttcatttcctatttttca 52546843  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt-ct 738  Q
      |||||||  |||||||||| |||||||  |||||||||||| || ||||||||||||||||||| ||||| ||||||||||| ||||||| |||| ||    
T  52546842 ctcacacctcattgaattgtgacaaatagcacattgtgattggctgctctttattcttgaagaatttttgatgttatttttctaaagatatatcattact 52546743  T
Q  739 ctatttt 745  Q
    |||||||    
T  52546742 ctatttt 52546736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 538 - 736
Target Start/End: Original strand, 51297020 - 51297219
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaa-tagcatcaagaatttttcaagacaca-gttgacaagttttaattgcacgatttatttattcactttctattt 635  Q
    |||||||||| |||||||||| ||||| ||||||||| | ||||||||||| || ||||| || ||||||||||| ||||||||| ||||||||||||||    
T  51297020 aaggaaaatgttatttctctaaaaaaaatagcatcaaaattttttcaagacgcaagttgataaattttaattgcatgatttatttgttcactttctattt 51297119  T
Q  636 ttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcat 735  Q
    ||||| || ||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||| | ||||||| ||||||||||||||||||| |||    
T  51297120 ttcagtcatacctttttgaattgtggcaaatagtgcattgtggttggctgttctttatgcttgaag-actcttgatgttatttttctagagatataacat 51297218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 557 - 730
Target Start/End: Complemental strand, 20912350 - 20912177
Alignment:
Q  557 tagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaat 656  Q
    ||||||||||||||||||||||||| |||||| || ||| |||||||||||||| ||||||||| ||||||| ||||||||||| ||||||| ||| |||    
T  20912350 tagaaaaatagcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttaaat 20912251  T
Q  657 tgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatat 730  Q
    | || ||||||||||||||| ||||  || ||||||||||||||||||||||||| |||||||| || ||||||    
T  20912250 tatgacaaatagtgcattgttattgactgctctttattcttgaagaattcttgatgttatttttttaaagatat 20912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 540 - 736
Target Start/End: Original strand, 34624486 - 34624670
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| |           ||||||||||| ||||||||| ||||||| ||||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagaaa-----------ttttaattgcatgatttatttgttcacttcctatttttca 34624574  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||| | ||  |||||||| |||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  34624575 gccacacttcctcaaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattctt-atgttatttttctagagatatagcatt 34624670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 596 - 736
Target Start/End: Original strand, 22650450 - 22650590
Alignment:
Q  596 caagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattc 695  Q
    ||||||||||||||| ||||||||| |||||||| || ||||||||||||||| ||| ||||||| || ||| ||  |||| ||||  ||||||||||||    
T  22650450 caagttttaattgcatgatttatttgttcactttttacttttcagccacacctccttaaattgtgtcagataatgatttgtaattgactgttctttattc 22650549  T
Q  696 ttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    || ||||     |||| ||| ||||||| ||||||||||||    
T  22650550 ttaaagagactgtgatgttacttttctaaagatatagcatt 22650590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 670 - 736
Target Start/End: Complemental strand, 43203318 - 43203252
Alignment:
Q  670 gcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||||||| || |||||||| |||||||||||||||| |||||||| |||| ||||||||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgttatttttttagaaatatagcatt 43203252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 596 - 703
Target Start/End: Complemental strand, 9496674 - 9496567
Alignment:
Q  596 caagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattc 695  Q
    |||| ||||| |||| ||||||||| ||||||  |||||||||||| |||||    || ||||||||||| |||| ||||||||||| |  |||||||||    
T  9496674 caagctttaactgcatgatttatttgttcactccctatttttcagcaacaccactgtgtattgtggcaaacagtgaattgtgattggctactctttattc 9496575  T
Q  696 ttgaagaa 703  Q
    ||||||||    
T  9496574 ttgaagaa 9496567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 686 - 732
Target Start/End: Complemental strand, 544688 - 544642
Alignment:
Q  686 ttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  544688 ttctttattcttgaagaattcttggtgttatttttctagagatatag 544642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Complemental strand, 50613069 - 50613027
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| ||||||||||| |||||||    
T  50613069 aatgctatatctctagaaaaataacatcaagaattcttcaaga 50613027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 3e-69; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 539 - 736
Target Start/End: Original strand, 23991948 - 23992145
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||| ||| | ||| |||||||||||||||||    
T  23991948 aggaaaatgctatttctctagaaacatagtatcaagaatttttcaagacacaactgacaagttttaattgcatgatatttttgttcactttctatttttc 23992047  T
Q  639 agccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |||| ||| |||||||||| ||||    
T  23992048 agccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttattcttgaagaattcttgatgttatatttgtagagatataacatt 23992145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 561 - 736
Target Start/End: Original strand, 27425773 - 27425948
Alignment:
Q  561 aaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtg 660  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| ||||| || |||||||||||    
T  27425773 aaaatagcatcaacaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaattgtg 27425872  T
Q  661 gcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||| |||||||||||||  |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  27425873 gcaaataatgcattgtgattgactgttctttattctttaagaattcttgatgttatttttctaaagatatagcatt 27425948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 577 - 736
Target Start/End: Complemental strand, 17612005 - 17611846
Alignment:
Q  577 tttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgt 676  Q
    ||||| ||||||||  |||||||||||||||| | ||||||||||||||||| |||||||| ||||||| || |||||||||||||||||| | |||| |    
T  17612005 ttttttaagacacaactgacaagttttaattgtatgatttatttattcacttcctattttttagccacatctccttgaattgtggcaaataattcattat 17611906  T
Q  677 gattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17611905 gattggttgttctttattcttgaagaattcttgatgttatttttctagcgatatagcatt 17611846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 597 - 734
Target Start/End: Complemental strand, 22327001 - 22326864
Alignment:
Q  597 aagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattct 696  Q
    |||||||||||||| ||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||   | ||||| ||||    
T  22327001 aagttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctctttcttct 22326902  T
Q  697 tgaagaattcttgatcttatttttctagagatatagca 734  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  22326901 tgaagaattcttgatgttatttttctaaagatatagca 22326864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 538 - 736
Target Start/End: Complemental strand, 8307725 - 8307529
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaa-tttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttt 636  Q
    |||||||||| |||||||| |||||||||||||| | || ||||||||||||||  || ||| |||||| |||| ||||||||| ||||||| |||||||    
T  8307725 aaggaaaatgatatttctcaagaaaaatagcatcgacaaatttttcaagacacaactggcaaattttaactgcatgatttatttgttcacttcctatttt 8307626  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    | |||||||||||   |||||||||| ||||||||||| ||||||  |  ||||||||||| || |||||||||| ||||||||||||| ||| ||||||    
T  8307625 tgagccacacctt---gaattgtggctaatagtgcattatgattgactcgtctttattcttaaaaaattcttgatgttatttttctagatatacagcatt 8307529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 538 - 680
Target Start/End: Complemental strand, 42195579 - 42195437
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||| |||  | | |||||||||||||| ||||||||| ||||||   |||||||    
T  42195579 aaggaaaatgttatttctctagaaaaataacatcaagaattttttaagatacaactaaaaagttttaattgcatgatttatttgttcactccttattttt 42195480  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgatt 680  Q
    ||| ||||||| |||||||||||| ||||||||||||| ||||    
T  42195479 cagacacacctccttgaattgtggtaaatagtgcattgagatt 42195437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 540 - 699
Target Start/End: Complemental strand, 25686563 - 25686406
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgattt---atttattcactttctatttt 636  Q
    |||||||| ||||||| || |||||||| || |||||||||||||||     | |||||||||| |||| | ||||    |||| || |||| |||||||    
T  25686563 ggaaaatgttatttctttacaaaaatagtattaagaatttttcaaga-----tcgacaagttttgattgtatgattattaatttgtttacttcctatttt 25686469  T
Q  637 tcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttga 699  Q
     ||||||||||| ||| |||||||| ||||||| |||| |||||| |||||||||||||||||    
T  25686468 ccagccacacctccttaaattgtggtaaatagtacattatgattgattgttctttattcttga 25686406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 673 - 736
Target Start/End: Complemental strand, 19479508 - 19479445
Alignment:
Q  673 ttgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||||| ||  |||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  19479508 ttgtgattgattactctttatttttgaagaatttttgatgttatttttctagagatatagcatt 19479445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 624 - 731
Target Start/End: Original strand, 41405797 - 41405904
Alignment:
Q  624 cactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttcta 723  Q
    ||||| |||||||||| ||| |||| |||| ||||||||||||||||||||||||  |  |  ||||||||||||||||  || |||| ||  |||||||    
T  41405797 cacttactatttttcaaccatacctccttgtattgtggcaaatagtgcattgtgaccgactcctctttattcttgaagagatcgtgatattccttttcta 41405896  T
Q  724 gagatata 731  Q
    ||||||||    
T  41405897 gagatata 41405904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 5e-65; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 540 - 734
Target Start/End: Original strand, 7646773 - 7646967
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||  || ||||||||||||||| ||||||||| |||| || ||||||||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaatttttcaagacacatctggcaagttttaattgcatgatttatttgttcatttcctatttttca 7646872  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagca 734  Q
    | ||||| | ||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||| ||||||||||||||||||||||    
T  7646873 gtcacacatccttgaattgtggcaaatagtgcattgtgattggctgctctttatttttaaagaattcttgatgttatttttctagagatatagca 7646967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 554 - 737
Target Start/End: Complemental strand, 25935694 - 25935511
Alignment:
Q  554 ctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttg 653  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||  ||||||||||||||||||||||||||| |||     
T  25935694 ctctagaaaaatagcatcaagaatttttcaagacacagctggcaagttttaattacatgatttattctttcactttctatttttcagccacacctcctta 25935595  T
Q  654 aattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcattc 737  Q
    ||||||| |||||||| |||| ||||| | || |||||||||||||| ||||||| || ||||||||||||||||||| |||||    
T  25935594 aattgtgacaaatagtacattatgattagatgctctttattcttgaataattcttaatgttatttttctagagatataacattc 25935511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 604 - 720
Target Start/End: Original strand, 12607123 - 12607239
Alignment:
Q  604 aattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaa 703  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||  || |||||||||||||||||    
T  12607123 aattgcatgatttatttgttcactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttattcttgaagaa 12607222  T
Q  704 ttcttgatcttattttt 720  Q
    |||||||| || |||||    
T  12607223 ttcttgatttttttttt 12607239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 567 - 734
Target Start/End: Original strand, 29487541 - 29487708
Alignment:
Q  567 gcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaat 666  Q
    |||||||||||||||| |||||||||||  |||| || |||||| ||||||||| ||||||  |||||||||||||||||||  || |||||||||||||    
T  29487541 gcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttgttcactccctatttttcagccacacctcatttaattgtggcaaat 29487640  T
Q  667 agtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagca 734  Q
    |||||| ||||||||  |  ||||||||||| ||||  || |||| ||| ||||||||| ||||||||    
T  29487641 agtgcaatgtgattgactactctttattctttaagatgtcgtgatattacttttctagatatatagca 29487708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 661 - 736
Target Start/End: Complemental strand, 17366929 - 17366854
Alignment:
Q  661 gcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||||| ||||||| | ||||||||||||||||| ||||||| || || |||||||||||||||||||||    
T  17366929 gcaaatagtgcagtgtgattagctgttctttattcttgaaaaattcttaatgttgtttttctagagatatagcatt 17366854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 616
Target Start/End: Original strand, 12607030 - 12607107
Alignment:
Q  540 ggaaaatgctatttctctag-aaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgattt 616  Q
    |||||||| | ||||||||| |||||||| ||||||||||||| |||||||| |||| |||||||||||||| |||||    
T  12607030 ggaaaatgttgtttctctaggaaaaatagtatcaagaattttttaagacacaattgataagttttaattgcatgattt 12607107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 589
Target Start/End: Complemental strand, 17367016 - 17366968
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacac 589  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa-aatttttcaagacac 17366968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 614 - 701
Target Start/End: Complemental strand, 29637081 - 29636994
Alignment:
Q  614 tttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaag 701  Q
    ||||||| ||||||||||||||||||||   |||| |||| |||||||||||||||   |||||||||  || |||||||||| ||||    
T  29637081 tttatttgttcactttctatttttcagctttacctccttgtattgtggcaaatagttagttgtgattgactgctctttattctagaag 29636994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 4e-62; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 538 - 731
Target Start/End: Complemental strand, 29314201 - 29314008
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||  |||||||| | ||||||||||||||    
T  29314201 aaggaaaatgctatttctctaaaaaaatagtatcaagaatttttcaagacacagttggtaagttttaattgcattatttatttgtccactttctattttt 29314102  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||| ||||||| ||| ||||||||||||||||||||||||||||  |  ||||||||||| || |||||||||| |||||||||||||||||||    
T  29314101 cagtcacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttattcttaaacaattcttgatgttatttttctagagatata 29314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 540 - 730
Target Start/End: Complemental strand, 39112848 - 39112658
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||||||  |||||||||||||||||| ||   |||||||||||||| ||| ||| ||||||||| | ||||||||| ||||||||||||||||||    
T  39112848 ggaaaatgctacatctctagaaaaatagcattaaatttttttcaagacacaattggcaaattttaattggatgatttatttgttcactttctatttttca 39112749  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatat 730  Q
    ||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  39112748 gccgcacctccttgaattatggcaaatagtgcattgtgattggttgctctttatttttgaagaattcttgatgttatttttctagagatat 39112658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 540 - 736
Target Start/End: Complemental strand, 41322729 - 41322533
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||| || || |||| |||||||||     
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacatagttagcaagttttaattgcatgatttaattgttaacttcctatttttct 41322630  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
     |||||||| |||||||| |  ||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  41322629 accacacctccttgaattttcacaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttaaagatatagcatt 41322533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 540 - 718
Target Start/End: Original strand, 36473048 - 36473226
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||||||||| ||||||||| ||||||| ||||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaatttttcaagacacaattggtaagttttaattgcatgatttatttgttcacttcctatttttca 36473147  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttattt 718  Q
    ||||||||| ||| ||||||| ||||||||| | ||||||||  || ||||||||||||||||||||||||| ||||||    
T  36473148 gccacacctccttaaattgtgtcaaatagtgtactgtgattgactgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 540 - 732
Target Start/End: Original strand, 15561913 - 15562105
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttca 639  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||| ||||||| ||||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttgttcacttcctatttttca 15562012  T
Q  640 gccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    ||||||||| |||||||||||||||||| ||||||  |||||  |||| ||||||||| ||   || ||||| |||||||||| |||||||||    
T  15562013 gccacacctccttgaattgtggcaaataatgcattacgattgactgttatttattcttaaaatttttttgatgttatttttcttgagatatag 15562105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 534 - 737
Target Start/End: Complemental strand, 34392305 - 34392111
Alignment:
Q  534 ttgtaaggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagacacagttgacaagttttaattgcacgatttatttattcactttcta 632  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||| |||          | |||||||||||||| ||||||||| ||||||||  |    
T  34392305 ttgtaaggaaaatgctatttctctaaaaaaatagaattaagaattttttcaa----------ataagttttaattgcatgatttatttgttcacttttca 34392216  T
Q  633 tttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||  || |||||||||||||| |||||||||| |||||||| |||||||||||    
T  34392215 tttttcagccacaccttcttaaattgtggcaaatagtacattgtgattgagtgctctttattcttgaaaaattcttgatgttatttttttagagatatag 34392116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 538 - 709
Target Start/End: Complemental strand, 2001849 - 2001679
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctattttt 637  Q
    |||||||||| |||||||||||||||||||||||||   ||||||||||||||| || |||||||||||| || ||||||||| |||||| ||||||||     
T  2001849 aaggaaaatgttatttctctagaaaaatagcatcaaatttttttcaagacacagctgccaagttttaattacatgatttatttgttcactatctattttc 2001750  T
Q  638 cagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttg 709  Q
    ||||||||||| ||| ||||||||||||| ||| ||| ||||||  || |||||||||||||||||||||||    
T  2001749 cagccacacctccttaaattgtggcaaatcgtgtatt-tgattgactgctctttattcttgaagaattcttg 2001679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 542 - 721
Target Start/End: Original strand, 11653712 - 11653894
Alignment:
Q  542 aaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcagc 641  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||| | ||||||||||||||| || ||||||||| ||||||| || ||||| |||    
T  11653712 aaaatgctatttctctacaaaaataacatcaagaattttttaagacacggctgacaagttttaattacatgatttatttgttcacttact-tttttaagc 11653810  T
Q  642 cacaccttcttgaattgtggcaaatagtgcattgtgattggt----tgttctttattcttgaagaattcttgatcttatttttc 721  Q
    ||||| | |||||||||||||||||||| |||| |||||| |    || ||||||||||||||||||||||||| |||||||||    
T  11653811 cacacatccttgaattgtggcaaatagtacattatgattgattgactgctctttattcttgaagaattcttgatgttatttttc 11653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 588 - 736
Target Start/End: Complemental strand, 4851885 - 4851737
Alignment:
Q  588 acagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgtt 687  Q
    |||| |||||||||||||||||| ||||||||| || | || ||||||||||||||||| | ||| |||||||| |||||||||||| ||||||  || |    
T  4851885 acagctgacaagttttaattgcatgatttatttgtttatttcctatttttcagccacacttccttaaattgtggaaaatagtgcattatgattgactgct 4851786  T
Q  688 ctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||    
T  4851785 ctttattcttaaaaaattcttgatgttatttttctagagatatagcatt 4851737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 604 - 736
Target Start/End: Complemental strand, 8551625 - 8551493
Alignment:
Q  604 aattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaa 703  Q
    ||||||| ||||||||| |||| ||||||||||| | ||||| || ||| |||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  8551625 aattgcatgatttatttgttcattttctattttttaaccacatctcctttaattgtggcaaacaatgcattgtgattggttgttctttattctcgaagaa 8551526  T
Q  704 ttcttgatcttatttttctagagatatagcatt 736  Q
    ||||| || |||||||| |||||||||||||||    
T  8551525 ttcttaatgttatttttttagagatatagcatt 8551493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 537 - 731
Target Start/End: Complemental strand, 1005795 - 1005598
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaa--tagcatcaagaatttttcaagacacagt-tgacaagttttaattgcacgatttatttattcactttctat 633  Q
    |||||||||||||||||||||| |||||  ||||||||| | ||||| ||| ||||   ||||||||||||||||||  |||||||| ||||||| ||||    
T  1005795 taaggaaaatgctatttctctaaaaaaaaatagcatcaaaatttttttaaggcacaaactgacaagttttaattgcataatttatttgttcacttcctat 1005696  T
Q  634 ttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatata 731  Q
    ||||||| |||||||  || ||||||| ||||| ||||||| | |||| ||  ||||||||||| ||||||| || || |||||||||||||||||||    
T  1005695 ttttcagtcacacctctttaaattgtgtcaaatggtgcattataattgattactctttattctttaagaatttttaatattatttttctagagatata 1005598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 539 - 642
Target Start/End: Complemental strand, 33889049 - 33888946
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttc 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||  |||||||| ||||||  |||||||||    
T  33889049 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagaaacaactgacaagttttaattgcataatttatttgttcactccctatttttc 33888950  T
Q  639 agcc 642  Q
    ||||    
T  33888949 agcc 33888946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 540 - 609
Target Start/End: Original strand, 37919508 - 37919577
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgc 609  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaagaatttatcaaaacacagttgacaagttttaattgc 37919577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 569 - 699
Target Start/End: Complemental strand, 11643455 - 11643324
Alignment:
Q  569 atcaagaatttttcaagacacagt-tgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaata 667  Q
    |||||||||||||  ||||||||  || ||| ||||||||| | ||||||||| |||||||  ||||||||| | |||| ||||| |||||||| |||||    
T  11643455 atcaagaattttttcagacacagcatggcaaattttaattgtatgatttatttgttcacttcgtatttttcaactacactttcttaaattgtggtaaata 11643356  T
Q  668 gtgcattgtgattggttgttctttattcttga 699  Q
    ||||||||||||||  || |||||||||||||    
T  11643355 gtgcattgtgattgactgctctttattcttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 605 - 711
Target Start/End: Original strand, 37919603 - 37919709
Alignment:
Q  605 attgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaat 704  Q
    |||||| ||||||||| ||||||| ||||||||||  |||| || ||| ||||||| |||||| ||||||||||||| ||||| ||||||||| || |||    
T  37919603 attgcatgatttatttgttcacttactatttttcactcacatctccttaaattgtgacaaataatgcattgtgattgattgttatttattcttaaaaaat 37919702  T
Q  705 tcttgat 711  Q
    |||||||    
T  37919703 tcttgat 37919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 538 - 586
Target Start/End: Complemental strand, 4824344 - 4824296
Alignment:
Q  538 aaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4824344 aaggaaaatgctatttctctagaaaaatagcattaagaatttttcaaga 4824296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 702
Target Start/End: Complemental strand, 4794239 - 4794159
Alignment:
Q  622 ttcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaaga 702  Q
    ||||||| ||||||||  |||| |||| | |  |||||||||||||||||||||||||||| || | ||||||||||||||    
T  4794239 ttcacttcctattttttggccaaacctccatatattgtggcaaatagtgcattgtgattggctgctatttattcttgaaga 4794159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 694 - 736
Target Start/End: Complemental strand, 1196553 - 1196511
Alignment:
Q  694 tcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  1196553 tcttaaagaattcttgatgttatttttctagagatatagcatt 1196511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 539 - 577
Target Start/End: Original strand, 13357628 - 13357666
Alignment:
Q  539 aggaaaatgctatttctctagaaaaatagcatcaagaat 577  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  13357628 aggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 540 - 608
Target Start/End: Original strand, 1416048 - 1416113
Alignment:
Q  540 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattg 608  Q
    |||||||| |||||||||||||||||||||||   || |||||||||| | | |||||| |||||||||    
T  1416048 ggaaaatgttatttctctagaaaaatagcatc---aaattttcaagacgctggtgacaaattttaattg 1416113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 4851737 - 4851779
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||||||||||| |||||||||||||| ||||    
T  4851737 aatgctatatctctagaaaaataacatcaagaattttttaaga 4851779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 34392112 - 34392154
Alignment:
Q  544 aatgctatttctctagaaaaatagcatcaagaatttttcaaga 586  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  34392112 aatgctatatctctaaaaaaataacatcaagaatttttcaaga 34392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 694 - 736
Target Start/End: Complemental strand, 36473094 - 36473052
Alignment:
Q  694 tcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||    
T  36473094 tcttgaaaaattcttgatgttatttttctagagaaatagcatt 36473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 703
Target Start/End: Complemental strand, 5549089 - 5548972
Alignment:
Q  586 acacagttgacaagttttaattgcacgatttatttattcactttctatttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttg 685  Q
    ||||||||| |||| | |||||||| ||||||||| ||||||  ||||| |||||  |||||  | || ||| |||||| || || ||| ||||||  ||    
T  5549089 acacagttgtcaaggtataattgcatgatttatttgttcactccctattgttcagggacaccaccgtgtattatggcaagtactgaattatgattgactg 5548990  T
Q  686 ttctttattcttgaagaa 703  Q
     |||||||||||||||||    
T  5548989 ctctttattcttgaagaa 5548972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 720
Target Start/End: Complemental strand, 33888942 - 33888885
Alignment:
Q  663 aaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttattttt 720  Q
    ||||| |||||||||||||  |||||||||||||| ||||||| || || ||||||||    
T  33888942 aaataatgcattgtgattgagtgttctttattcttaaagaatttttaatgttattttt 33888885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 112; Significance: 4e-56; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 541 - 736
Target Start/End: Complemental strand, 492865 - 492670
Alignment:
Q  541 gaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaattgcacgatttatttattcactttctatttttcag 640  Q
    ||||||| |||||||||| |||||||||||||| | |||||||||||||    | |||||||||||||||  |||||||| |||| || |||||||||||    
T  492865 gaaaatgttatttctctaaaaaaatagcatcaaaattttttcaagacacgacagtcaagttttaattgcataatttatttgttcatttcctatttttcag 492766  T
Q  641 ccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatagcatt 736  Q
    |||||||| ||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  492765 ccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 492670  T

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Target: scaffold0132 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 642 - 544
Alignment:
Q  633 tttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||| || ||||||||    
T  642 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatatag 544  T

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Target: scaffold0132; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 633 - 732
Target Start/End: Complemental strand, 8602 - 8504
Alignment:
Q  633 tttttcagccacaccttcttgaattgtggcaaatagtgcattgtgattggttgttctttattcttgaagaattcttgatcttatttttctagagatatag 732  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||| || ||||||||    
T  8602 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatatag 8504  T

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Target: scaffold0339 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 537 - 605
Target Start/End: Complemental strand, 13445 - 13378
Alignment:
Q  537 taaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagttgacaagttttaa 605  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||    
T  13445 taaggaaaatgatatttctctagaaaaatagcatcaagaa-ttttcaagacacagatggtaagttttaa 13378  T

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