View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5821-Insertion-3 (Length: 935)
Name: NF5821-Insertion-3
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5821-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 3878506 - 3878136
Alignment:
| Q |
9 |
caatgtcacacaaaatacctaaccttagcaaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggata |
108 |
Q |
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| T |
3878506 |
caatgtcacacaaaataccta-ccttagcaaagacattgccttcatgaccagcaaatcaatagtaggtcctgatatgctcaatgatgtagcattcggata |
3878408 |
T |
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| Q |
109 |
acgcctacacatgctcacaactgtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagc |
208 |
Q |
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| T |
3878407 |
acgcctacacatgctcacaactgtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagc |
3878308 |
T |
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| Q |
209 |
tcgcattgttcttcagatatgttccgattttcaaaattcaaatt--------aatcttcatgagtactaacggtt--ccactgcttagaaactctagcag |
298 |
Q |
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| T |
3878307 |
tcacattgttcttcagatatgttccgattttcaaaattcaaattcatccagaaatcttcatgagtactaacggttcgccactgcttagaaactctagcag |
3878208 |
T |
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| Q |
299 |
ctctgcagagattggtctgatccagatacgagaaaacctaaatttcacaagtacagaaattaaaagttatag |
370 |
Q |
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| T |
3878207 |
ctctgcagagattggtctgatccagatacgagaaaacctaaatttcacaagtacagaaatttaaagttatag |
3878136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 603 - 875
Target Start/End: Complemental strand, 3877808 - 3877539
Alignment:
| Q |
603 |
gcaaaattatactccctcttctcatgttcttcttttaactttaaatgggtccggcaaatgattgatgagattgaaccccgatttgtccgttcatggacta |
702 |
Q |
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| T |
3877808 |
gcaaaattatactccctcttctcatgttcttcttttaactttaaatgggtccggcaaatgatcgatgagattgaaccccgatatgtcggttcatggacta |
3877709 |
T |
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| Q |
703 |
gttaccgaatcaaacattttcgtattaaatggggtcggcttatgttaccatgtttaatcataaaccatatttccattaaactcattcattaatttcaacc |
802 |
Q |
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| T |
3877708 |
gataccgaatcaaacattttcgtattaaatggggtcggcttatgttaccatgtttaatcataaaccatatttcggttcaac----tcattaatttcaagc |
3877613 |
T |
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| Q |
803 |
acccatattgaatttgatgaattatatttgcttctagttctccatcgtttgata-tatggacccatgatattta |
875 |
Q |
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| T |
3877612 |
acccatattgaatttgatgaattatatttgcttctatttctccatcgttttatattatggacccatgatattta |
3877539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 438 - 605
Target Start/End: Complemental strand, 3878071 - 3877892
Alignment:
| Q |
438 |
catgtaaatgtcacaaagaaggattgtttcatcatctcttactatatgtaatgccatttgggctgcttcataaatcaccattatc------------tta |
525 |
Q |
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| T |
3878071 |
catgtaaatgtcacaaagaaggattgtttcatcatctcttactatatgtaatgccatttgggctgcttcataaatcaccattatcttaggcgctatctta |
3877972 |
T |
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| Q |
526 |
gtttgattgaacctacactgctatgtgcctatgtcgaggtcaaaaactcacatcaacccatgtacgaacctttgcatgca |
605 |
Q |
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| T |
3877971 |
gtttgattgaacctacactgctatgtgcctatgtcgaggtcaaaaactcacatcaacccatgtacgaacctttgcatgca |
3877892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 165 - 357
Target Start/End: Complemental strand, 3864241 - 3864039
Alignment:
| Q |
165 |
ataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatgttccgattttcaaaattcaaatt--------aatc |
256 |
Q |
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| T |
3864241 |
ataaaactaaaaacattcataaataaaacaacatatactcaagctcacattgttcttcagatatgtcccgattttcaaaattcaaactcttccaaaaatc |
3864142 |
T |
|
| Q |
257 |
ttcatgagtactaacgg--ttccactgcttagaaactctagcagctctgcagagattggtctgatccagatacgagaaaacctaaatttcacaagtacag |
354 |
Q |
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| T |
3864141 |
ttcatgtgtactggcagcccgccactgcttacaaactctggcagctctgcagagattgttctgatccagaaatgagaagacctaaatttcacaaataaag |
3864042 |
T |
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| Q |
355 |
aaa |
357 |
Q |
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| T |
3864041 |
aaa |
3864039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 3864491 - 3864345
Alignment:
| Q |
17 |
cacaaaatacctaaccttagcaaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctac |
116 |
Q |
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| T |
3864491 |
cacaaaataccta-cctaaacaaagagattgccttcatgaccagcaaataaatagaaggtcctgatatgctcaatgctgtagcattcggataacgcctac |
3864393 |
T |
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| Q |
117 |
acatgctcacaactgtgattatacataaaactttaaataagcacattt |
164 |
Q |
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| T |
3864392 |
acatgtcctcaactgtaattacacattgaactttgaataagtacattt |
3864345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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