View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5821_high_3 (Length: 417)

Name: NF5821_high_3
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5821_high_3
NF5821_high_3
[»] chr4 (3 HSPs)
chr4 (31-226)||(54034916-54035111)
chr4 (336-396)||(54034723-54034783)
chr4 (223-262)||(54034857-54034896)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 54035111 - 54034916
Alignment:
Q  31 aatttgaaggagcatgtggagaaggtgtgtttctcactacgggga------gtgttattacggttgctaatttgagcatggagaggggtcatatagttga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54035111 aatttgaaggagcatgtggagaaggtgtgtttctcactacggggacttgtagtgttattacggttgctaatttgagcatgcagaggggtcatatagttga 54035012  T
Q  125 ataatattctccttttagatttagatttagatttagatggactctgattgctgaggacataattttgtatgcctaatattgaggtggtcctcctcacatg 224  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54035011 ataatattctccttttagatttagatttagat------ggactctgattgctgaggacataattttgtatgcctaatattgaggtggtcctcctcacatg 54034918  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 54034783 - 54034723
Alignment:
Q  336 actcattgaaagctattctttgttgcttttaaatttccatttgaaatggcattacactgtg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54034783 actcattgaaagctattctttgttgcttttaaatttccatttgaaatggcattactctgtg 54034723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 54034896 - 54034857
Alignment:
Q  223 tgttggggctaccatttctcttttaagtggcagttatgaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54034896 tgttggggctaccatttctcttttaagtggcagttatgaa 54034857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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