View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5821_low_1 (Length: 453)

Name: NF5821_low_1
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5821_low_1
NF5821_low_1
[»] chr7 (1 HSPs)
chr7 (19-441)||(35050486-35050908)
[»] chr4 (2 HSPs)
chr4 (27-441)||(20006498-20006911)
chr4 (198-400)||(54076444-54076645)
[»] chr1 (3 HSPs)
chr1 (27-441)||(14123455-14123868)
chr1 (198-400)||(41700305-41700506)
chr1 (198-308)||(41705899-41706009)
[»] chr5 (1 HSPs)
chr5 (198-308)||(23558538-23558648)
[»] chr3 (3 HSPs)
chr3 (26-81)||(26304846-26304901)
chr3 (241-308)||(49961744-49961811)
chr3 (35-127)||(49961541-49961633)
[»] chr6 (3 HSPs)
chr6 (26-149)||(8533012-8533135)
chr6 (241-308)||(20787465-20787532)
chr6 (35-127)||(20787643-20787735)
[»] chr2 (4 HSPs)
chr2 (241-308)||(38177221-38177288)
chr2 (241-298)||(15048026-15048083)
chr2 (51-127)||(38177399-38177475)
chr2 (35-127)||(38177751-38177843)


Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 35050486 - 35050908
Alignment:
Q  19 ggtttgatggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35050486 ggtttgatggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaa 35050585  T
Q  119 agtgatgaatcggatcaacaaattgaaaattgaattaaactgtgaaggaagttcttctgtcattatagaagaagacagtttagttcaaaatcagatggct 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35050586 agtgatgaatcggatcaacgaattgaaaattgaattaaactgtgaaggaagttcttctgtcattatagaagaagacagtttagttcaaaatcagatggct 35050685  T
Q  219 aaaattcttgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaaggttttaagaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35050686 aaaattcttgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaaggttttaagaa 35050785  T
Q  319 agaaaactcaaaatagaaacaataagagtaacaattatcttagccaagaagaggtgaccttgaaaatttttaagtttattttctctagttaaatgtaata 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35050786 agaaaactcaaaatagaaacaataagagtaacaattatcttagccaagaagaggtgaccttgaaaattttcaagtttattttctctagttaaatgtaata 35050885  T
Q  419 gcatgtatgtctaattttatatt 441  Q
    |||||||||||||||||||||||    
T  35050886 gcatgtatgtctaattttatatt 35050908  T

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Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 27 - 441
Target Start/End: Complemental strand, 20006911 - 20006498
Alignment:
Q  27 ggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatga 126  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20006911 ggaaatgttgaattgcaactagttggtaaagcatgtgatgccttttacgaagttgtttctatggggatacatactgaagatgatttattgaaagtgatga 20006812  T
Q  127 atcggatcaacaaattgaaaattgaattaaactgtgaaggaagttcttctgtcattatagaagaagacagtttagttcaaaatcagatggctaaaattct 226  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  20006811 atcggatcaacgaattgaaaattgatttaaactgtgaaggaagttcttctgtcattatagaagaagacggtttagttcaaaatcagatggctaaaattgt 20006712  T
Q  227 tgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaaggttttaagaaagaaaact 326  Q
    ||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||     
T  20006711 tgatcctacagcaactcgaagtaaagg-cgtcctccctcaaaaaggaaggcttctaaagttgatcaaattgtgcagaagaaggttttaagaaagaaaaca 20006613  T
Q  327 caaaatagaaacaataagagtaacaattatcttagccaagaagaggtgaccttgaaaatttttaagtttattttctctagttaaatgtaatagcatgtat 426  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  20006612 caaaatagaaacaaaaagagtaacagttatctcagccaagaagaggtgaccttgaaaatttacaagtttattttctctagttaaatgtaatagcatgtat 20006513  T
Q  427 gtctaattttatatt 441  Q
    |||||||||||||||    
T  20006512 gtctaattttatatt 20006498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 400
Target Start/End: Complemental strand, 54076645 - 54076444
Alignment:
Q  198 ttagttcaaaatcagatggctaaaattcttgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattg 297  Q
    |||||||| ||||||||| ||||||||||||||||||||   |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||| ||    
T  54076645 ttagttcagaatcagatgactaaaattcttgatcctgcagtgactcgaagtaaagggcgtcctccttcaaaaaggaaggcttctaaagttgatcaaagtg 54076546  T
Q  298 tgcaaaagaaggttttaagaaagaaaactcaaaatagaaacaataagagtaacaattatcttagccaagaagaggtgaccttgaaaatttttaagtttat 397  Q
    || ||| |||| ||    ||||||||   ||||| || ||||| || | ||||| |||||  || ||||||||||| | |||| ||||||| ||||||||    
T  54076545 tgaaaaggaagcttgctggaaagaaaggacaaaaaagcaacaaaaaaaataacacttatcaaagtcaagaagaggtaatcttg-aaattttcaagtttat 54076447  T
Q  398 ttt 400  Q
    |||    
T  54076446 ttt 54076444  T

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Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 27 - 441
Target Start/End: Original strand, 14123455 - 14123868
Alignment:
Q  27 ggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatga 126  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14123455 ggaaatgttgaattgcaactagttggtaaagcatgtgatgccttttacgaagttgtttctatggggatacatactgaagatgatttattgaaagtgatga 14123554  T
Q  127 atcggatcaacaaattgaaaattgaattaaactgtgaaggaagttcttctgtcattatagaagaagacagtttagttcaaaatcagatggctaaaattct 226  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  14123555 atcggatcaacgaattgaaaattgatttaaactgtgaaggaagttcttctgtcattatagaagaagacggtttagttcaaaatcagatggctaaaattgt 14123654  T
Q  227 tgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaaggttttaagaaagaaaact 326  Q
    ||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||     
T  14123655 tgatcctacagcaactcgaagtaaagg-cgtcctccctcaaaaaggaaggcttctaaagttgatcaaattgtgcagaagaaagttttaagaaagaaaaca 14123753  T
Q  327 caaaatagaaacaataagagtaacaattatcttagccaagaagaggtgaccttgaaaatttttaagtttattttctctagttaaatgtaatagcatgtat 426  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14123754 caaaatagaaacaaaaagagtaacagttatctcagccaagaagaggtgaccttgaaaatttacaagtttattttctctagttaaatgtaatagcatgtat 14123853  T
Q  427 gtctaattttatatt 441  Q
    |||||||||||||||    
T  14123854 gtctaattttatatt 14123868  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 400
Target Start/End: Original strand, 41700305 - 41700506
Alignment:
Q  198 ttagttcaaaatcagatggctaaaattcttgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattg 297  Q
    |||||||| ||||||||| ||||||||||||||||||||   |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||| ||    
T  41700305 ttagttcagaatcagatgactaaaattcttgatcctgcagtgactcgaagtaaagggcgtcctccttcaaaaaggaaggcttctaaagttgatcaaagtg 41700404  T
Q  298 tgcaaaagaaggttttaagaaagaaaactcaaaatagaaacaataagagtaacaattatcttagccaagaagaggtgaccttgaaaatttttaagtttat 397  Q
    || ||| |||| ||    ||||||||   ||||| || ||||| || | ||||| |||||  || ||||||||||| | |||| ||||||| ||||||||    
T  41700405 tgaaaaggaagcttgctggaaagaaaggacaaaaaagcaacaaaaaaaataacacttatcaaagtcaagaagaggtaatcttg-aaattttcaagtttat 41700503  T
Q  398 ttt 400  Q
    |||    
T  41700504 ttt 41700506  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 41705899 - 41706009
Alignment:
Q  198 ttagttcaaaatcagatggctaaaattcttgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattg 297  Q
    |||||||| ||||||||| ||||||||||||||||||||   |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||| ||    
T  41705899 ttagttcagaatcagatgactaaaattcttgatcctgcagtgactcgaagtaaagggcgtcctccttcaaaaaggaaggcttctaaagttgatcaaagtg 41705998  T
Q  298 tgcaaaagaag 308  Q
    || ||| ||||    
T  41705999 tgaaaaggaag 41706009  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 23558538 - 23558648
Alignment:
Q  198 ttagttcaaaatcagatggctaaaattcttgatcctgcaacaactcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattg 297  Q
    |||||||||||||||||| |||||||||||||||||| |   |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||| ||    
T  23558538 ttagttcaaaatcagatgactaaaattcttgatcctgaagtgactcgaagtaaagggcgtcctccttcaaaaaggaaggcttctaaagttgatcaaagtg 23558637  T
Q  298 tgcaaaagaag 308  Q
    || ||| ||||    
T  23558638 tgaaaaggaag 23558648  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 26304846 - 26304901
Alignment:
Q  26 tggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagttg 81  Q
    |||||||||||| || ||||  |||||||| |||||||||||||||||||||||||    
T  26304846 tggaaatgttgagttacaacgtgttggtaaagcatgtgatgccttttacgaagttg 26304901  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 49961744 - 49961811
Alignment:
Q  241 ctcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaag 308  Q
    ||||||||||||| |||||||| |||||||||||  |||||| | ||||||| |||||| | ||||||    
T  49961744 ctcgaagtaaagggcgtcctccttcaaaaaggaagacttctatagttgatcagattgtgaagaagaag 49961811  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 49961541 - 49961633
Alignment:
Q  35 tgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatgaa 127  Q
    |||||||||||  |  ||||| || |||||||||||||| ||| ||| |||   | ||||| ||| ||||||||||||| |||||||||||||    
T  49961541 tgaattgcaacgtgcaggtaaagcttgtgatgccttttatgaatttgcttcaacgaggataaatagtgaagatgatttagtgaaagtgatgaa 49961633  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 8533135 - 8533012
Alignment:
Q  26 tggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatg 125  Q
    |||||||||||| || || |  |||||||| ||||||||||||||||| ||||||| |||| | |  |||   || ||||| || |||||| ||||||||    
T  8533135 tggaaatgttgagttacagcgtgttggtaaagcatgtgatgccttttatgaagttgcttctatagatataagcaccgaagaagagttattggaagtgatg 8533036  T
Q  126 aatcggatcaacaaattgaaaatt 149  Q
    ||| |||||||  | |||||||||    
T  8533035 aattggatcaaggacttgaaaatt 8533012  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 20787532 - 20787465
Alignment:
Q  241 ctcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaag 308  Q
    ||||||||||||| |||||||| |||||||||||  |||||| | ||||||| |||||| | ||||||    
T  20787532 ctcgaagtaaagggcgtcctccttcaaaaaggaagacttctatagttgatcagattgtgaagaagaag 20787465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 20787735 - 20787643
Alignment:
Q  35 tgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatgaa 127  Q
    |||||||||||  || ||||| || |||||||||||||| ||  ||| |||   | ||||| ||| ||||||||||||| |||||||||||||    
T  20787735 tgaattgcaacgtgtgggtaaagcttgtgatgccttttatgagtttgcttcaacgaggataaatagtgaagatgatttagtgaaagtgatgaa 20787643  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 38177288 - 38177221
Alignment:
Q  241 ctcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgtgcaaaagaag 308  Q
    ||||||||||||| |||||||| |||||||||||  |||||| | ||||||| |||||| | ||||||    
T  38177288 ctcgaagtaaagggcgtcctccttcaaaaaggaagacttctatagttgatcagattgtgaagaagaag 38177221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 15048083 - 15048026
Alignment:
Q  241 ctcgaagtaaaggacgtcctccctcaaaaaggaaagcttctaaacttgatcaaattgt 298  Q
    ||||||||||||| |||||||| |||||||||||  |||||| | ||||||| |||||    
T  15048083 ctcgaagtaaagggcgtcctccttcaaaaaggaagacttctatagttgatcagattgt 15048026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 38177475 - 38177399
Alignment:
Q  51 ggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatgaa 127  Q
    ||||| || |||||||||||||| ||| ||| |||   | ||||| ||| ||||||||||||| |||||||||||||    
T  38177475 ggtaaagcttgtgatgccttttatgaatttgcttcaacgaggataaatagtgaagatgatttagtgaaagtgatgaa 38177399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 38177751 - 38177843
Alignment:
Q  35 tgaattgcaactagttggtaaggcatgtgatgccttttacgaagttgtttctgtggggatacatactgaagatgatttattgaaagtgatgaa 127  Q
    |||||||||||  || |||||  | |||||||||||||| ||| |||||||   | ||||| ||  ||||||||||||| |||||||||||||    
T  38177751 tgaattgcaacgtgtaggtaaaacttgtgatgccttttatgaatttgtttcaacgaggataaatggtgaagatgatttagtgaaagtgatgaa 38177843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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