View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5821_low_4 (Length: 414)

Name: NF5821_low_4
Description: NF5821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5821_low_4
NF5821_low_4
[»] chr1 (12 HSPs)
chr1 (1-394)||(10978942-10979335)
chr1 (1-394)||(10903047-10903440)
chr1 (1-394)||(10914207-10914600)
chr1 (32-390)||(11028710-11029070)
chr1 (4-283)||(10932590-10932870)
chr1 (1-394)||(11010518-11010901)
chr1 (12-394)||(11005121-11005503)
chr1 (90-381)||(10993818-10994109)
chr1 (117-390)||(11032915-11033188)
chr1 (135-390)||(11007480-11007735)
chr1 (80-293)||(10901350-10901563)
chr1 (279-392)||(10974142-10974255)


Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 10978942 - 10979335
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978942 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 10979041  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979042 catcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 10979141  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10979142 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgttact 10979241  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979242 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttg 10979335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 10903047 - 10903440
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  10903047 taattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattattatcatctccaa 10903146  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    | ||  ||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10903147 cgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattga 10903246  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  10903247 aggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttact 10903346  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttg 394  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||    
T  10903347 tcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagttcttccttctacttg 10903440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 10914207 - 10914600
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| || |||  || |||||||||||    
T  10914207 taattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctccaa 10914306  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    ||||  ||  ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  10914307 catctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccattga 10914406  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  10914407 aggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttact 10914506  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttg 394  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| ||||    
T  10914507 tcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaattcttccttctgcttg 10914600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 390
Target Start/End: Complemental strand, 11029070 - 11028710
Alignment:
Q  32 ttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaa 131  Q
    |||||| ||||| ||| ||||||||||||||||| ||| |||||||||| ||| ||| |||  ||||||||||||||||| ||||||||||  |||||||    
T  11029070 ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa 11028971  T
Q  132 gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacac 231  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||||    
T  11028970 gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac 11028871  T
Q  232 cacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcg--tcacttcccttccatcatgtaatcgatcatatat 329  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||| ||    
T  11028870 cacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaat 11028771  T
Q  330 ccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttcta 390  Q
    ||| |||||||||||||||||||||||||| ||||||| ||||||| | ||| ||||||||    
T  11028770 ccagaaagggaaataaatttggctagattgttcagccaatgcattctaattcttccttcta 11028710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 283
Target Start/End: Original strand, 10932590 - 10932870
Alignment:
Q  4 ttcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacat 103  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||| ||  || |||||||||||    
T  10932590 ttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctccaacat 10932689  T
Q  104 cctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aacactttatccattgaag 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  10932690 cctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttccattgaag 10932789  T
Q  203 gacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgt 283  Q
    |||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10932790 gacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt 10932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 11010518 - 11010901
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    |||||||| | |||||||||| |||||||| |||||||||||||| ||||||||||||||||||  ||| |||||||||| ||| | |||         |    
T  11010518 taattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa---------a 11010607  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    ||||| ||| ||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  11010608 catccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattga 11010707  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||| || || |||||||||||||||||||| || ||||||||||||||||||||||| |  || ||||||||||||||||| || ||||| || |||    
T  11010708 aggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttact 11010807  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttg 394  Q
    || ||||||||||| |||  |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  11010808 tcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttg 11010901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 11005503 - 11005121
Alignment:
Q  12 agaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctact 111  Q
    |||||||| | |||||||||||||| || || ||||| | | ||||||| || | |||  ||| ||  ||||| ||| | |||||| || ||||||  ||    
T  11005503 agaaccaacacgagatcaggttggttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagct 11005404  T
Q  112 ggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgt 211  Q
    ||| |||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| ||      
T  11005403 ggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcac 11005304  T
Q  212 cgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatc 311  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||||||    
T  11005303 ctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatc 11005204  T
Q  312 atgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttg 394  Q
    ||||||  || |||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||    
T  11005203 atgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttccttctacttg 11005121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 90 - 381
Target Start/End: Complemental strand, 10994109 - 10993818
Alignment:
Q  90 atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 189  Q
    |||||||| |||||| ||| |||||  ||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  10994109 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 10994010  T
Q  190 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt 289  Q
    ||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||||||| |    
T  10994009 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattct 10993910  T
Q  290 caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttc 381  Q
    |||| || ||||| ||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  10993909 caattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttc 10993818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 117 - 390
Target Start/End: Original strand, 11032915 - 11033188
Alignment:
Q  117 atcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggt 216  Q
    |||||||| | || ||| |||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||    |||    
T  11032915 atcttgtacataatagtcaggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggt 11033014  T
Q  217 tttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgta 316  Q
    || | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| |||||   ||| |||| |||||||||||| ||||    
T  11033015 ttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgta 11033114  T
Q  317 atcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttcta 390  Q
    |  ||||||| | |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| ||||||||    
T  11033115 actgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaagttcttccttcta 11033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 135 - 390
Target Start/End: Original strand, 11007480 - 11007735
Alignment:
Q  135 aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccac 234  Q
    ||||| |||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||    ||||| |  || |||||||||    
T  11007480 aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac 11007579  T
Q  235 aaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa 334  Q
    |||||||| ||||||||||||||||||||||| || || |||| |||  |||| ||||| || | ||| |||||||| |||||  ||||||| | |||||    
T  11007580 aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa 11007679  T
Q  335 aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttcta 390  Q
    ||||||||||||  |||||||||||  |||||| | ||| ||||||| ||||||||    
T  11007680 aagggaaataaacctggctagattgaccagccaatacatccaagttcttccttcta 11007735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 293
Target Start/End: Original strand, 10901350 - 10901563
Alignment:
Q  80 ttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcat 179  Q
    ||||| ||| |||||||| || ||||||  ||||| |||||||| || ||| ||||||||| ||||| |||||||| ||||||||||||| | |||||||    
T  10901350 ttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcat 10901449  T
Q  180 ctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatct 279  Q
    ||| | ||||||||||||||||||||| ||    |||||||||||  ||||||| || |||||||||||| |||||||||||||||| ||||| | ||||    
T  10901450 ctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatct 10901549  T
Q  280 gtgtcattttcaat 293  Q
    |||||||| |||||    
T  10901550 gtgtcattctcaat 10901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 279 - 392
Target Start/End: Original strand, 10974142 - 10974255
Alignment:
Q  279 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 378  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||     
T  10974142 tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa 10974241  T
Q  379 ttcctccttctact 392  Q
    ||| ||||||||||    
T  10974242 ttcttccttctact 10974255  T

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