View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5822-Insertion-12 (Length: 70)

Name: NF5822-Insertion-12
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5822-Insertion-12
NF5822-Insertion-12
[»] chr7 (1 HSPs)
chr7 (9-69)||(35050487-35050547)
[»] chr4 (1 HSPs)
chr4 (16-69)||(20006858-20006911)
[»] chr1 (1 HSPs)
chr1 (16-69)||(14123455-14123508)
[»] chr3 (1 HSPs)
chr3 (15-69)||(26304846-26304900)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 35050487 - 35050547
Alignment:
Q  9 gtttgatggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagtt 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35050487 gtttgatggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagtt 35050547  T

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Target: chr4 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 20006911 - 20006858
Alignment:
Q  16 ggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagtt 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20006911 ggaaatgttgaattgcaactagttggtaaagcatgtgatgccttttacgaagtt 20006858  T

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Target: chr1 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 14123455 - 14123508
Alignment:
Q  16 ggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagtt 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14123455 ggaaatgttgaattgcaactagttggtaaagcatgtgatgccttttacgaagtt 14123508  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 26304846 - 26304900
Alignment:
Q  15 tggaaatgttgaattgcaactagttggtaaggcatgtgatgccttttacgaagtt 69  Q
    |||||||||||| || ||||  |||||||| ||||||||||||||||||||||||    
T  26304846 tggaaatgttgagttacaacgtgttggtaaagcatgtgatgccttttacgaagtt 26304900  T

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