View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822-Insertion-3 (Length: 900)
Name: NF5822-Insertion-3
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 4224424 - 4224832
Alignment:
| Q |
9 |
gattttgttggagctcttaagtggaagagggtgtgaaggtggattattggtaaaatgggttttgcctttgattaaggatatgagatttagtgaagttttg |
108 |
Q |
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| T |
4224424 |
gattttgttggagcttttaagtggaagagggtgtgaaggtggattattggtaaaatgggttttgcctttgattaaggatatgagatttagtgaagttttg |
4224523 |
T |
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| Q |
109 |
gatcctaggttgattattccttctaatatgaatgctattgttagattagcaaaagttgcttctgcttgtgttggtaatccaaggaaatgtagaccttgtg |
208 |
Q |
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| T |
4224524 |
gatcctaggttgattattccttctaatatgaatgctattattagattagcaaaagttgcttctgcttgtgttggtaatccaaggaaatgtagaccttgtg |
4224623 |
T |
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| Q |
209 |
tgaaccatgtgatgaacattttgaatgatttagagatggaagtgtgtctcttatcaaattgattgagca--atggtcttcaattttgtacaaaagtttct |
306 |
Q |
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| T |
4224624 |
tgaaccatgtgatgaacattttgaatgatttagagatggaagtgtgtctcttatcaaattgattgagcaatatggtcttcaattttgtacaaaagtttct |
4224723 |
T |
|
| Q |
307 |
acttctagttctgggtcaatctcaagtttagttagtgtttcaaacgatttttatacattgatttatgatggattacatattaagatgatccacatagaac |
406 |
Q |
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| T |
4224724 |
acttctagttctaggtcaatctcaagtttagttagtgtttcaaacgatttttatacattgatttatgatggattacatattaagatgatccacatagaac |
4224823 |
T |
|
| Q |
407 |
ttgtctatg |
415 |
Q |
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| T |
4224824 |
ttgtctatg |
4224832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 666 - 874
Target Start/End: Original strand, 4225083 - 4225295
Alignment:
| Q |
666 |
tgacaaatggagtattcagaaagaaacatgaaattaacttgtgaaaaagagtgacaaaaattaggtgaatttgacactcaatggatggtagtaattggta |
765 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4225083 |
tgacgaatggagtatttagaaagaaacatgaaattaacttgtgaaaaagagtgacaaaaattaggtgaatttgacactcaatggatggtagtaattggta |
4225182 |
T |
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| Q |
766 |
aggtaagtggaagattttcatgagggaagggccttatcccctagttgtgagaggttgac-aatgagag-ataatttttgtgt-gaatttt-gaatagaaa |
861 |
Q |
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| T |
4225183 |
aggtaagtggaagattttcatgagggaagggccttatcccctagttgtgagaggttgacaaatgagagaataatttttgtgtggaattttggaatagaaa |
4225282 |
T |
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| Q |
862 |
gatggagcggtgc |
874 |
Q |
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| T |
4225283 |
gatggagcggtgc |
4225295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 486 - 605
Target Start/End: Original strand, 4224903 - 4225022
Alignment:
| Q |
486 |
agttaaaagtgctcatatttaatgtttgataatacataaaacaaaattatatcgtctagagaatatatattcttttcgttct--aatgtaagtaaaagtt |
583 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||| ||| |||||||||||| |
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| T |
4224903 |
agttaaaagtgctcatatttaatgtttgataatacatgaaacaaaattatatcgtctaaaga--atatattctttccgttctaaaatataagtaaaagtt |
4225000 |
T |
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| Q |
584 |
ggtcaacataaattgatgtatc |
605 |
Q |
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| T |
4225001 |
ggtcaacataaattgatgtatc |
4225022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 30167040 - 30167144
Alignment:
| Q |
89 |
tgagatttagtgaagttttggatcctaggttgattattccttctaatatgaatgctattgttagattagcaaaagttgcttctgcttgtgttggtaatcc |
188 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||| | ||||||| |||||| ||||||||||||||||| |||| ||||||||||||||| | |
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| T |
30167040 |
tgagatttagtgaagttttggaatctaggttgatgattccttttgatatgaaggctatttttagattagcaaaagttacttcagcttgtgttggtaattc |
30167139 |
T |
|
| Q |
189 |
aagga |
193 |
Q |
| |
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||||| |
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| T |
30167140 |
aagga |
30167144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 43163558 - 43163482
Alignment:
| Q |
89 |
tgagatttagtgaagttttggatcctaggttgattattccttctaatatgaatgctattgttagattagcaaaagtt |
165 |
Q |
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||||||||||||| |||||| |||||| | |||| ||||||| | ||||||| || |||||||||||||||||||| |
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| T |
43163558 |
tgagatttagtgatgttttgaatcctaagctgatgattccttttgatatgaaggccgttgttagattagcaaaagtt |
43163482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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