View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5822-Insertion-5 (Length: 643)
Name: NF5822-Insertion-5
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 36 - 634
Target Start/End: Original strand, 26008936 - 26009532
Alignment:
| Q |
36 |
gacattattggaccgaatagtctttgaattgtgcatttccataaggagaagttcatcctcctattaaacaatgaaatattcaacttcataaagtagccaa |
135 |
Q |
| |
|
|||||| ||||||| |||| | ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26008936 |
gacattgttggaccaaataatttttga-ttgtgcatttctataaggagaagttcatcctcccattaaacaatgaaatattcaacttcataaagtagccaa |
26009034 |
T |
|
| Q |
136 |
aacattatataagaaaattacaaataagatgatagctaacatctcttcaaatgactagtgtagcaaactactcttctcttcacacaagaagcaaaaggaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26009035 |
aacattatataagaaaattacaaataagatgatagctaacatctcttcaaattactagtgtagcaaactactcttctattcacacaagaagcaaaaggaa |
26009134 |
T |
|
| Q |
236 |
gcataaaaaacaatttacaaaacaataaaatattttattgctctcaacttgcaattaattacaaggataaaattgcaaatcctctcaattataatttttg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26009135 |
acataaaaaacaatttacaaaacaataaaatattgtattgctctcaacttgcaattaattacaaggataaaattgcaaatcctctcaattataatttttg |
26009234 |
T |
|
| Q |
336 |
catgtgaacattaaaaattgcaaacttactcaaagacattgaaatacccaatcaatgtacacccctatgccttagttgttgtggtggtgaagaaaattca |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26009235 |
catgtgaacattaaaaattgcaaacttactcaaagacattgaaatacccaatcaatgtacacccctatgccttagttgttgtggtggtgaagaaaattca |
26009334 |
T |
|
| Q |
436 |
tactaactctccatattatgtttatttataataactctatctcttattttgttgtatttatgcaccnnnnnnnnnnnacaagaaactaaaataattgtct |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
26009335 |
tactaactctccatattatgtttatttataataactctatctcttattttgttgtgtttatgca-ctttttttttttacaagaaactaaaataattgtct |
26009433 |
T |
|
| Q |
536 |
gatggatgtacctttgagacatcacatatattttttgaaataattgtctgatcatgcaatatattatatctgttcatagtataacacgtttaatcttgt |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26009434 |
gatggatgtacctttgagacatcacatatatttttttaaataattgtctgatcatgcaatatattatatctgttcatagtataacacgtttaatcttgt |
26009532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 10438409 - 10438520
Alignment:
| Q |
61 |
gaattgtgcatttccataaggagaagttcatcctcctattaaacaatgaaatattcaacttcataaagtagccaaaacattatataagaaaattacaaat |
160 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||| |||||| | ||||| ||||||| |||||||||| |||||||| ||| |||| |||||| |
|
|
| T |
10438409 |
gaattgtgcattggtataaggagaggatcatcctcctatcaaacaaaggaatatccaacttc--aaagtagccataacattatctaa-aaaaacacaaat |
10438505 |
T |
|
| Q |
161 |
aagatgatagctaac |
175 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
10438506 |
aagttgataactaac |
10438520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University