View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822-Insertion-6 (Length: 510)
Name: NF5822-Insertion-6
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822-Insertion-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Original strand, 38894323 - 38894826
Alignment:
| Q |
8 |
atggttggtgcgtttgggttcttgtacttggcacagaacaaggacaagagtaaagcagatgcagggtaccctgcaggtattggtgtgaagaattcactgc |
107 |
Q |
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| T |
38894323 |
atggttggtgcgtttgggttcttgtacttggcacagaacaaggacaagagtaaagcagatgcagggtaccctgcaggtattggtgtgaagaattcactgc |
38894422 |
T |
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| Q |
108 |
ttctcttgggtgtggttaacattttgggattcctttttactttcttggtgcctgaggcaaatggaaaatctttggaggagatgtcaggtgagaacgaaga |
207 |
Q |
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| T |
38894423 |
ttctcttgggtgtggttaacattttgggattcctttttactttcttggtgcccgaggcaaatggaaaatctttggaggagatgtcaggtgagaacgaaga |
38894522 |
T |
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| Q |
208 |
ggaagccggaaccaatggagagttggagcaatctcattctcataacagaactgtttcacatgtttagattgagtttaattagtttg-tttatcttgtaat |
306 |
Q |
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| T |
38894523 |
ggaagccggaaccaatggagagttggagcaatctcattctcataacagaactgtttcacatgtttagattgagtttaattagtttgttttatcttgtaat |
38894622 |
T |
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| Q |
307 |
aaagcactatctttcaatttgtttaggatgcaccaaagctctcccttcccctgtcacgtctttatctcggattatgtttgatgaaccattagttctacaa |
406 |
Q |
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| T |
38894623 |
aaagcactatctttcaatttgtttaggatgcaccaaagctctcccttcccctgtcacgtctttatcccggattatgtctgatgaaccattagttctacaa |
38894722 |
T |
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| Q |
407 |
atatcaaatgcaatgttgcaattgatgtttaatttttggatttaatagttagtagtttcgattcattttcaataaccagtttcgactgtgttctgttttc |
506 |
Q |
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| T |
38894723 |
atatcaaatgcaatgttgcaattgatgtttaatttttggatttaatagttagtagtttcgattcattttcaaaaaccagtttcgactgtgttctattttc |
38894822 |
T |
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| Q |
507 |
tttt |
510 |
Q |
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|||| |
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| T |
38894823 |
tttt |
38894826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 38885137 - 38885341
Alignment:
| Q |
8 |
atggttggtgcgtttgggttcttgtacttggcacagaacaaggacaagagtaaagcagatgcagggtaccctgcaggtattggtgtgaagaattcactgc |
107 |
Q |
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| T |
38885137 |
atggttggtgcattcgggttcttgtatttggcacaaaacaaagacaagagtaaagcagatgcagggtaccctgcaggtattggtatgaagaattcattga |
38885236 |
T |
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| Q |
108 |
ttctcttgggtgtggttaacattttgggattcctttttactttcttggtgcctgaggcaaatggaaaatctttggaggagatgtcaggtgagaacgaaga |
207 |
Q |
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| T |
38885237 |
ttctgttgggagtttgtaacattttggggttcttgtgtactttcttagtacccgaggcaaatggaaaatctttagaggaaatgtcaggtgagaatgatga |
38885336 |
T |
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| Q |
208 |
ggaag |
212 |
Q |
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| T |
38885337 |
ggaag |
38885341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 30619698 - 30619558
Alignment:
| Q |
59 |
aaagcagatgcagggtaccctgcaggtattggtgtgaagaattcactgcttctcttgggtgtggttaacattttgggattcctttttactttcttggtgc |
158 |
Q |
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| T |
30619698 |
aaagctgatgcagggtaccctgctggtattggtgtgagaaactcattgattttgttaggtgttgttaacattttgggattctgttttactttcttggtgc |
30619599 |
T |
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| Q |
159 |
ctgaggcaaatggaaaatctttggaggagatgtcaggtgag |
199 |
Q |
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| T |
30619598 |
ctgagacaaagggaaaatctcttgaggaaatgtctggtgag |
30619558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 30614938 - 30614804
Alignment:
| Q |
65 |
gatgcagggtaccctgcaggtattggtgtgaagaattcactgcttctcttgggtgtggttaacattttgggattcctttttactttcttggtgcctgagg |
164 |
Q |
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||||||||||||||||| ||||||||||||| || ||| || || || |||| |||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
30614938 |
gatgcagggtaccctgctggtattggtgtgagaaactcattgttttgtttaggtgctgttaccattttgggattctgttttactttcttggtgcctgagg |
30614839 |
T |
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| Q |
165 |
caaatggaaaatctttggaggagatgtcaggtgag |
199 |
Q |
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| T |
30614838 |
caaagggaagatctcttgaggaaatgtctggtgag |
30614804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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