View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822-Insertion-8 (Length: 345)
Name: NF5822-Insertion-8
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 32 - 285
Target Start/End: Original strand, 29892976 - 29893229
Alignment:
| Q |
32 |
tatcacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaag |
131 |
Q |
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| T |
29892976 |
tatcacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaag |
29893075 |
T |
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| Q |
132 |
aaacacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatga |
231 |
Q |
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| T |
29893076 |
aaacacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatga |
29893175 |
T |
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| Q |
232 |
cattgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
285 |
Q |
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| T |
29893176 |
tattgtaatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
29893229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 32 - 285
Target Start/End: Original strand, 29887603 - 29887856
Alignment:
| Q |
32 |
tatcacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaag |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29887603 |
tatcacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttgaatccctatacaag |
29887702 |
T |
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| Q |
132 |
aaacacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatga |
231 |
Q |
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| T |
29887703 |
aaatacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggtgagtcgagttgggtcacatatctcttctaatatgagaaaatttgatgg |
29887802 |
T |
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| Q |
232 |
cattgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
285 |
Q |
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| T |
29887803 |
cattgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
29887856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 29887942 - 29887998
Alignment:
| Q |
286 |
gtgattagaattattgaatcaaaccaacgttcatatatgtttcttcttaatcattta |
342 |
Q |
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| T |
29887942 |
gtgattagaattattgaatcaaaccaacattcatatatgtttcttcttaatccttta |
29887998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 29893968 - 29894004
Alignment:
| Q |
309 |
ccaacgttcatatatgtttcttcttaatcatttattg |
345 |
Q |
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| T |
29893968 |
ccaacgttcatatatgtttcttcttaatcctttattg |
29894004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 29887598 - 29887629
Alignment:
| Q |
8 |
aagattatcacctgaaaatatgactatcacct |
39 |
Q |
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| T |
29887598 |
aagattatcacctgaaaatatgactatcacct |
29887629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 29892971 - 29893002
Alignment:
| Q |
8 |
aagattatcacctgaaaatatgactatcacct |
39 |
Q |
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| T |
29892971 |
aagattatcacctgaaaatatgactatcacct |
29893002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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