View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5822_high_14 (Length: 297)

Name: NF5822_high_14
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5822_high_14
NF5822_high_14
[»] chr3 (21 HSPs)
chr3 (19-297)||(19857900-19858178)
chr3 (19-297)||(19853341-19853618)
chr3 (32-297)||(24839999-24840263)
chr3 (33-297)||(19943548-19943810)
chr3 (42-125)||(19848990-19849073)
chr3 (42-125)||(20036638-20036721)
chr3 (39-125)||(19838393-19838479)
chr3 (46-125)||(19956084-19956163)
chr3 (42-118)||(19812287-19812363)
chr3 (38-125)||(19951124-19951211)
chr3 (32-127)||(20016226-20016321)
chr3 (42-125)||(20046123-20046206)
chr3 (48-125)||(19989522-19989599)
chr3 (42-125)||(19818557-19818640)
chr3 (42-125)||(26647004-26647087)
chr3 (46-117)||(30914651-30914722)
chr3 (42-122)||(26653155-26653235)
chr3 (180-279)||(19950971-19951070)
chr3 (171-239)||(20005163-20005231)
chr3 (230-294)||(26651865-26651929)
chr3 (181-297)||(26646839-26646955)
[»] chr8 (4 HSPs)
chr8 (29-125)||(22652110-22652206)
chr8 (42-126)||(22689690-22689774)
chr8 (42-105)||(22685715-22685778)
chr8 (228-279)||(11564354-11564405)
[»] chr4 (2 HSPs)
chr4 (42-125)||(6397773-6397856)
chr4 (41-125)||(6398261-6398345)
[»] chr5 (2 HSPs)
chr5 (41-125)||(26354961-26355045)
chr5 (46-125)||(9815037-9815116)
[»] chr1 (1 HSPs)
chr1 (42-134)||(1717205-1717297)
[»] chr7 (6 HSPs)
chr7 (42-93)||(12581424-12581475)
chr7 (36-93)||(12497241-12497298)
chr7 (36-93)||(12521106-12521163)
chr7 (88-125)||(12496285-12496322)
chr7 (88-125)||(12520150-12520187)
chr7 (88-125)||(12580439-12580476)
[»] chr6 (1 HSPs)
chr6 (187-269)||(34408266-34408348)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 19858178 - 19857900
Alignment:
Q  19 cttttcacattaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19858178 cttttcacattaaagtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatat 19858079  T
Q  119 ccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgttgatgagcttctgttccacatctttcatttcctgatctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19858078 ccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgttgatgagcttctgttccacatcttgcatttcctgatctt 19857979  T
Q  219 cgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19857978 cgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttc 19857900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 19853618 - 19853341
Alignment:
Q  19 cttttcacattaaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatat 118  Q
    ||||||||| |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| | | ||||| |     
T  19853618 cttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaaagaaaaaag 19853519  T
Q  119 ccatccacactgttgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgttgatgagcttctgttccacatctttcatttcctgatctt 218  Q
     ||||||||| | |||||||||||  | || ||||||||| ||||||||||  ||||||||||||||||||||| ||||  |||||||||  ||||||||    
T  19853518 tcatccacacagatgtggaaggtggca-tagttttgataaccctctccttttcttcaatgttgatgagcttctgctccaactctttcattctctgatctt 19853420  T
Q  219 cgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttc 297  Q
    | |||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||||| | ||| |||||||||||    
T  19853419 caagtgatttgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttc 19853341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 32 - 297
Target Start/End: Original strand, 24839999 - 24840263
Alignment:
Q  32 agtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgt 131  Q
    ||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  24839999 agtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatccacactga 24840098  T
Q  132 tgtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgttgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaa 231  Q
    ||| |||||||   |||| |||   ||||||||| |   |||||||||||||||||||||||||||| ||| |||| || |||||||| ||  |   |||    
T  24840099 tgtagaaggtg-ccatacctttcgaaatcctctcttggctttcaatgttgatgagcttctgttccacctctctcatctcttgatcttcaaggtgggcgaa 24840197  T
Q  232 aacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttc 297  Q
    |||||||  ||||||||||||||| ||||||||||| |  |||||||| | ||| |||||||||||    
T  24840198 aacaggaagaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgcttc 24840263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 33 - 297
Target Start/End: Complemental strand, 19943810 - 19943548
Alignment:
Q  33 gtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgtt 132  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  19943810 gtatctatgaggaaaaacaaa--ttgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatccacactgat 19943713  T
Q  133 gtggaaggtgaaaatacttttgataatcctctcctttgtttcaatgttgatgagcttctgttccacatctttcatttcctgatcttcgag-tggtttgaa 231  Q
    |||||||| |  |   ||||||| |||| |||| |   |||||||| ||||||||||||||||||| | | | || ||||||||||| || ||| |  ||    
T  19943712 gtggaaggggccataccttttga-aatcatctcttggctttcaatgctgatgagcttctgttccacctttctaatctcctgatcttcaagttgggtgaaa 19943614  T
Q  232 aacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttc 297  Q
    |||||||| ||||||||||||||| ||||||||||| |  ||||| || | ||| |||||||||||    
T  19943613 aacaggatgaccaaagagagagtatccccccaaaacaatgacatcttccaaagtgattgttgcttc 19943548  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 19849073 - 19848990
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  19849073 aggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 20036638 - 20036721
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20036638 aggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 19838479 - 19838393
Alignment:
Q  39 attaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  19838479 attaggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatcca 19838393  T

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Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 19956163 - 19956084
Alignment:
Q  46 aaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  19956163 aaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19956084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 19812363 - 19812287
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatat 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | | ||||||||    
T  19812363 aggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatat 19812287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 19951211 - 19951124
Alignment:
Q  38 tattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||||||||| ||| ||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||||||||||||    
T  19951211 tattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatcca 19951124  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 20016226 - 20016321
Alignment:
Q  32 agtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccaca 127  Q
    ||||| ||| ||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||   ||| |||||||||||||    
T  20016226 agtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccaca 20016321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 20046206 - 20046123
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||||||||| |||||||||| ||| || ||||| || |||||||||||||||||||||||||| |||||||||||    
T  20046206 aggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatcca 20046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 19989599 - 19989522
Alignment:
Q  48 aacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatcca 19989522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 19818640 - 19818557
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||  |||||||| | || ||||| ||||||||    
T  19818640 aggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatcca 19818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 26647087 - 26647004
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||| ||| ||| |||||||||| ||| ||||||||||| |||||||||||||||||||| |||||| |||| |||||    
T  26647087 aggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatcca 26647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 30914722 - 30914651
Alignment:
Q  46 aaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaata 117  Q
    |||||||||||||| |||||||||| ||| ||||||||||| |||||||||||| ||||||| |||||||||    
T  30914722 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 30914651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 26653235 - 26653155
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccat 122  Q
    |||||||||||||||||| |||||||  ||||| ||||| ||||| ||||||||||||||||  || ||||||||||||||    
T  26653235 aggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 19951070 - 19950971
Alignment:
Q  180 tgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 279  Q
    |||||||||| | ||| || ||||||||||| |||||||  ||||   ||||||||||||||||||  | || ||||||||||||||||| |||||||||    
T  19951070 tgatgagcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctc 19950971  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 20005163 - 20005231
Alignment:
Q  171 tttcaatgttgatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggat 239  Q
    |||||||||||| |||||||||||| || ||| |||| ||||||||||| ||| |  ||||||||||||    
T  20005163 tttcaatgttgacgagcttctgttcgacctctctcatctcctgatcttcaagttgggtgaaaacaggat 20005231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 26651929 - 26651865
Alignment:
Q  230 aaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgc 294  Q
    |||||||||| ||||||||||||||| ||||||||||| |  |||||||| | ||| ||||||||    
T  26651929 aaaacaggataaccaaagagagagtagccccccaaaacaatgacatcctccaaagtgattgttgc 26651865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 297
Target Start/End: Complemental strand, 26646955 - 26646839
Alignment:
Q  181 gatgagcttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctct 280  Q
    |||||| |||| |||||| ||| ||||||| || ||||| ||||   ||||||||||||| ||||  | ||  ||||||||||||||||  | ||||||     
T  26646955 gatgagtttcttttccacctctctcatttcttggtcttcaagtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctcc 26646856  T
Q  281 atagtaattgttgcttc 297  Q
    | |||||| ||||||||    
T  26646855 aaagtaatagttgcttc 26646839  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 22652110 - 22652206
Alignment:
Q  29 taaagtatctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||||||| || ||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22652110 taaagtatctatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 22652206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 22689690 - 22689774
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccac 126  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||||||||||||| ||||||||||    
T  22689690 aggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatccac 22689774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 22685715 - 22685778
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactaccttta 105  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  22685715 aggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 11564354 - 11564405
Alignment:
Q  228 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctc 279  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  11564354 tgaaaacaggatcaccaaaaagagagaaaccccccaaaaccataacatcctc 11564405  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 6397773 - 6397856
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||| || ||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||    
T  6397773 aggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatcca 6397856  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 6398345 - 6398261
Alignment:
Q  41 taggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||||||||||||| | |||||| ||||||| || |||||||| ||||||||||||||||||| ||| || |||||||||||    
T  6398345 taggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatcca 6398261  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 26354961 - 26355045
Alignment:
Q  41 taggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||||||||||||||| ||||||| | |||  ||||||||||| |||| ||||||||||||||| ||||||| |||||||||    
T  26354961 taggaaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatcca 26355045  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 9815116 - 9815037
Alignment:
Q  46 aaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    |||||||| ||||| ||||| |||||||  || |||||||||||||||||||||||||| |||||||||| |||||||||    
T  9815116 aaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatcca 9815037  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 1717297 - 1717205
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatccacactgttgt 134  Q
    |||||||||| |||  || |||||||||||||||||||||||||| |||||||||||||||||||| |  |||| ||||||||| | ||||||    
T  1717297 aggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccataatgttgt 1717205  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 12581475 - 12581424
Alignment:
Q  42 aggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatt 93  Q
    |||||||||||||||||| |||||||||||||| || |||||||| ||||||    
T  12581475 aggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaatt 12581424  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 12497298 - 12497241
Alignment:
Q  36 tctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatt 93  Q
    ||||| |||||||||||||||||| ||||| |||||||| || |||||||| ||||||    
T  12497298 tctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12497241  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 12521163 - 12521106
Alignment:
Q  36 tctattaggaaaaacaaaaattgagaaccaagtagcaagaaatgcttcatgctcaatt 93  Q
    ||||| |||||||||||||||||| ||||| |||||||| || |||||||| ||||||    
T  12521163 tctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt 12521106  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 12496322 - 12496285
Alignment:
Q  88 tcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12496322 tcaatttcactacatttatcgatgaacatatccatcca 12496285  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 12520187 - 12520150
Alignment:
Q  88 tcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12520187 tcaatttcactacatttatcgatgaacatatccatcca 12520150  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 12580476 - 12580439
Alignment:
Q  88 tcaatttcactacctttatcgatgaaaatatccatcca 125  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12580476 tcaatttcactacatttatcgatgaacatatccatcca 12580439  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 34408266 - 34408348
Alignment:
Q  187 cttctgttccacatctttcatttcctgatcttcgagtggtttgaaaacaggatcaccaaagagagagtaaccccccaaaacca 269  Q
    |||||||||||| |||  |||||| |||||||| ||||   ||||||||||||| | |||| ||||||| ||| |||||||||    
T  34408266 cttctgttccacctctcccatttcttgatcttcaagtgtgctgaaaacaggatctcgaaagtgagagtatccctccaaaacca 34408348  T

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