View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_high_18 (Length: 262)
Name: NF5822_high_18
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 25822214 - 25822466
Alignment:
| Q |
6 |
agataatactgatctaaacatgaaatttctcgaaaatcatcatatgccaaagctaataatagaagagtcaaataggcttgcaggagtgaatcctactagc |
105 |
Q |
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| T |
25822214 |
agataatactgatctaaacatgaaatttctcgaaaatcgtcatatgccgaagctaataatagaagagtcaaatagacttgcaggagtgaatcctactaac |
25822313 |
T |
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| Q |
106 |
catgaagacattttcgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaagcaagaactgtgtggctacccttctgaccttacca |
205 |
Q |
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| T |
25822314 |
catgaagacatttttgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaaccaagaactgtgtggctacccttctgaccttacca |
25822413 |
T |
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| Q |
206 |
atacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattca |
258 |
Q |
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| T |
25822414 |
atacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattca |
25822466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 25816415 - 25816588
Alignment:
| Q |
6 |
agataatactgatctaaacatgaaatttctcgaaaatcatcatatgccaaagctaataatagaagagtcaaataggcttgcaggagtgaatcctactagc |
105 |
Q |
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| T |
25816415 |
agataatactcatctggacatgaaatttttcgaatatcacaatatgccaaatctaatgatggaagggtcaagtaggcttgctggagtgaatcctactaac |
25816514 |
T |
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| Q |
106 |
catgaagacattttcgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaagcaagaact |
179 |
Q |
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| T |
25816515 |
cttgaaggctattttgggtcatcgatacaatctccgacagcaatgcaggggtatcagaatgtgaaccaacaact |
25816588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 25813235 - 25813300
Alignment:
| Q |
73 |
tcaaataggcttgcaggagtgaatcctactagccatgaagacattttcgggtcatcgatacaatct |
138 |
Q |
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| T |
25813235 |
tcaaataggcttgcaagagtgaatcctactaaccttgaaaactttttcgggtcatcgatacaatct |
25813300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 25818906 - 25818959
Alignment:
| Q |
73 |
tcaaataggcttgcaggagtgaatcctactagccatgaagacattttcgggtca |
126 |
Q |
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| T |
25818906 |
tcaaataggcttgcaggagtgaatcctactaaccttgaaaactttttcgggtca |
25818959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 33648440 - 33648505
Alignment:
| Q |
73 |
tcaaataggcttgcaggagtgaatcctactagccatgaagacattttcgggtcatcgatacaatct |
138 |
Q |
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| T |
33648440 |
tcaaataggcttgcaggagtgaatcctactaaccttgaaaacatttttgggtcatcaatacaatct |
33648505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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