View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5822_high_21 (Length: 242)
Name: NF5822_high_21
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38894547 - 38894323
Alignment:
| Q |
1 |
caactctccattggttccggcttcctcttcgttctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38894547 |
caactctccattggttccggcttcctcttcgttctcacctgacatctcctccaaagattttccatttgcctcgggcaccaagaaagtaaaaaggaatccc |
38894448 |
T |
|
| Q |
101 |
aaaatgttaaccacacccaagagaagcagtgaattcttcacaccaatacctgcagggtaccctgcatctgctttactcttgtccttgttctgtgccaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38894447 |
aaaatgttaaccacacccaagagaagcagtgaattcttcacaccaatacctgcagggtaccctgcatctgctttactcttgtccttgttctgtgccaagt |
38894348 |
T |
|
| Q |
201 |
acaagaacccaaacgcaccaaccat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38894347 |
acaagaacccaaacgcaccaaccat |
38894323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 38885341 - 38885137
Alignment:
| Q |
21 |
cttcctcttcgttctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaa |
120 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||||||||||||||||| || || ||||||||| | | ||| |||||||||||| || ||||| |
|
|
| T |
38885341 |
cttcctcatcattctcacctgacatttcctctaaagattttccatttgcctcgggtactaagaaagtacacaagaaccccaaaatgttacaaactcccaa |
38885242 |
T |
|
| Q |
121 |
gagaagcagtgaattcttcacaccaatacctgcagggtaccctgcatctgctttactcttgtccttgttctgtgccaagtacaagaacccaaacgcacca |
220 |
Q |
| |
|
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||| |
|
|
| T |
38885241 |
cagaatcaatgaattcttcataccaatacctgcagggtaccctgcatctgctttactcttgtctttgttttgtgccaaatacaagaacccgaatgcacca |
38885142 |
T |
|
| Q |
221 |
accat |
225 |
Q |
| |
|
||||| |
|
|
| T |
38885141 |
accat |
38885137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 30619558 - 30619698
Alignment:
| Q |
34 |
ctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaagagaagcagtgaa |
133 |
Q |
| |
|
|||||| ||||| ||||| | ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||| || | || || ||| |
|
|
| T |
30619558 |
ctcaccagacatttcctcaagagattttccctttgtctcaggcaccaagaaagtaaaacagaatcccaaaatgttaacaacacctaacaaaatcaatgag |
30619657 |
T |
|
| Q |
134 |
ttcttcacaccaatacctgcagggtaccctgcatctgcttt |
174 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30619658 |
tttctcacaccaataccagcagggtaccctgcatcagcttt |
30619698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 30614804 - 30614938
Alignment:
| Q |
34 |
ctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaagagaagcagtgaa |
133 |
Q |
| |
|
|||||| ||||| ||||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||| || || || ||| |
|
|
| T |
30614804 |
ctcaccagacatttcctcaagagatcttccctttgcctcaggcaccaagaaagtaaaacagaatcccaaaatggtaacagcacctaaacaaaacaatgag |
30614903 |
T |
|
| Q |
134 |
ttcttcacaccaatacctgcagggtaccctgcatc |
168 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||| |
|
|
| T |
30614904 |
tttctcacaccaataccagcagggtaccctgcatc |
30614938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University