View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_high_3 (Length: 559)
Name: NF5822_high_3
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 139 - 545
Target Start/End: Complemental strand, 4224832 - 4224424
Alignment:
| Q |
139 |
catagacaagttctatgtggatcatcttaatatgtaatccatcataaatcaatgtataaaaatcgtttgaaacactaactaaacttgagattgacccaga |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4224832 |
catagacaagttctatgtggatcatcttaatatgtaatccatcataaatcaatgtataaaaatcgtttgaaacactaactaaacttgagattgacctaga |
4224733 |
T |
|
| Q |
239 |
actagaagtagaaacttttgtacaaaattgaagaccat--tgctcaatcaatttgataagagacacacttccatctctaaatcattcaaaatgttcatca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4224732 |
actagaagtagaaacttttgtacaaaattgaagaccatattgctcaatcaatttgataagagacacacttccatctctaaatcattcaaaatgttcatca |
4224633 |
T |
|
| Q |
337 |
catggttcacacaaggtctacatttccttggattaccaacacaagcagaagcaacttttgctaatctaacaatagcattcatattagaaggaataatcaa |
436 |
Q |
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| T |
4224632 |
catggttcacacaaggtctacatttccttggattaccaacacaagcagaagcaacttttgctaatctaataatagcattcatattagaaggaataatcaa |
4224533 |
T |
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| Q |
437 |
cctaggatccaaaacttcactaaatctcatatccttaatcaaaggcaaaacccattttaccaataatccaccttcacaccctcttccacttaagagctcc |
536 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4224532 |
cctaggatccaaaacttcactaaatctcatatccttaatcaaaggcaaaacccattttaccaataatccaccttcacaccctcttccacttaaaagctcc |
4224433 |
T |
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| Q |
537 |
aacaaaatc |
545 |
Q |
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| T |
4224432 |
aacaaaatc |
4224424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4224970 - 4224903
Alignment:
| Q |
1 |
atatattctctagacgatataattttgttttatgtattatcaaacattaaatatgagcacttttaact |
68 |
Q |
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| T |
4224970 |
atatattctttagacgatataattttgtttcatgtattatcaaacattaaatatgagcacttttaact |
4224903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 30167144 - 30167040
Alignment:
| Q |
361 |
tccttggattaccaacacaagcagaagcaacttttgctaatctaacaatagcattcatattagaaggaataatcaacctaggatccaaaacttcactaaa |
460 |
Q |
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|||||| ||||||||||||||| |||| ||||||||||||||||| |||||| ||||||| | ||||||| |||||||||| ||||||||||||||||| |
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| T |
30167144 |
tccttgaattaccaacacaagctgaagtaacttttgctaatctaaaaatagccttcatatcaaaaggaatcatcaacctagattccaaaacttcactaaa |
30167045 |
T |
|
| Q |
461 |
tctca |
465 |
Q |
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||||| |
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|
| T |
30167044 |
tctca |
30167040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 465
Target Start/End: Original strand, 43163482 - 43163558
Alignment:
| Q |
389 |
aacttttgctaatctaacaatagcattcatattagaaggaataatcaacctaggatccaaaacttcactaaatctca |
465 |
Q |
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|||||||||||||||||||| || ||||||| | ||||||| |||| | |||||| |||||| ||||||||||||| |
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| T |
43163482 |
aacttttgctaatctaacaacggccttcatatcaaaaggaatcatcagcttaggattcaaaacatcactaaatctca |
43163558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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