View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_low_11 (Length: 375)
Name: NF5822_low_11
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 25822532 - 25822806
Alignment:
| Q |
1 |
ttccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctgattggcactcccctgatagaaaagtagattggtctatccccggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25822532 |
ttccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctgattggcactcccctgatagaaaagtagattggtctatccccggt |
25822631 |
T |
|
| Q |
101 |
gataaactcaatgaaatgacgacatcttattctttcggcttcctaaacgatactagcaacgcttcaacaatagctgctgcatcaaatgttgatgaccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25822632 |
gataaactcaatgaaatgacgacatcttattctttcggcttcctaaacgatactagcaacgcttcaacaatagctgctgcatcaaatgttgatgaccatt |
25822731 |
T |
|
| Q |
201 |
atgcattattaagccaggaatcttgggttagctcgcttgtgaaggatgatgatccaacattggaatctgatcaac |
275 |
Q |
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| T |
25822732 |
atgcattattaagccaggaatcttgggttagctcgcttgtgaaggatgatgatccaacattggaatctgatcaac |
25822806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 25816909 - 25817017
Alignment:
| Q |
248 |
gatgatccaacattggaatctgatcaacatggtgttgaagttgaagatcaactgcaatgccataatccgaatgttgttccatcttagccggagcaattgt |
347 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |||| |
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| T |
25816909 |
gatgatccaacattggaatctgattaacatggtgttgaagttgaagatcaactgcaatgccataatccggacgatgttccatcttagccggagcagttgt |
25817008 |
T |
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| Q |
348 |
gcatgttat |
356 |
Q |
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||||||||| |
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| T |
25817009 |
gcatgttat |
25817017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 25822800 - 25822866
Alignment:
| Q |
293 |
gatcaactgcaatgccataatccgaatgttgttccatcttagccggagcaattgtgcatgttatatg |
359 |
Q |
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| T |
25822800 |
gatcaactgcaatgccataatccggatgttgttccatcttagccggagcaattgtgcatgttatatg |
25822866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 25816827 - 25816870
Alignment:
| Q |
152 |
actagcaacgcttcaacaatagctgctgcatcaaatgttgatga |
195 |
Q |
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| T |
25816827 |
actagcaacacttcaacaatggctgctgcatcaaatgttgatga |
25816870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 25819391 - 25819425
Alignment:
| Q |
282 |
ttgaagttgaagatcaactgcaatgccataatccg |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
25819391 |
ttgaagttgaagatcaactgcaatgccataatccg |
25819425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 316
Target Start/End: Original strand, 33648867 - 33649126
Alignment:
| Q |
45 |
ctgccttctctgattggcactcccctgatagaaaagtagattggtctatccccggtgataaactcaatgaaatgacgacatcttattctttcggcttcct |
144 |
Q |
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|||||||||||| || | ||| |||||| ||||| |||| ||||| |||| ||| ||| |||||||| |||||| || ||||||||||||||| || | |
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| T |
33648867 |
ctgccttctctggttcgggctctcctgatggaaaattagactggtccatccgcggcgatgaactcaataaaatgaggaaatcttattctttcggatttcg |
33648966 |
T |
|
| Q |
145 |
aaacgatactagcaacgcttcaacaatagctgctgcatcaaatgttgatgaccattatgcattattaagccaggaatcttgggttagctcgcttgtgaag |
244 |
Q |
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||| | ||||| |||||||||| ||||||||||||| ||| ||||| | ||| || |||||||| ||||||||||||| || ||||| | |
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| T |
33648967 |
caacagaagtagca---cttcaacaatggctgctgcatcaagtgtcgatgatccagatgtgtttttaagccatgaatcttgggttaattcacttgt---g |
33649060 |
T |
|
| Q |
245 |
gatgatgatccaacattggaatctgatcaacatggtgttgaagttgaagatcaactgcaatgccataatccg |
316 |
Q |
| |
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|| |||| ||||||| |||||| |||||||||| | |||||||||||||||||||||| |||||||| |
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| T |
33649061 |
gaggatggtccaacaatggaatttgatcaacattg------agttgaagatcaactgcaatgctataatccg |
33649126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 36224561 - 36224430
Alignment:
| Q |
1 |
ttccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctgattggcactcccctgatagaaaagtagattggtctatccccggt |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| | ||||||||||| |||||||| |||| ||| |||||| ||||| |||| | ||| |||| ||| |
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| T |
36224561 |
ttccgagcttccttctgctagctcagttgccatggaaccttctac---cttctctggttggggctctcctgatggaaaattagactagtccatccgcggc |
36224465 |
T |
|
| Q |
101 |
gataaactcaatgaaatgacgacatcttattcttt |
135 |
Q |
| |
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||| |||||||| |||||| || |||||||||||| |
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| T |
36224464 |
gatgaactcaataaaatgaggaaatcttattcttt |
36224430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33648667 - 33648804
Alignment:
| Q |
1 |
ttccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctgattggcactcccctgatagaaaagtagattggtctatccccggt |
100 |
Q |
| |
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|||| ||||||||||||||| ||||||||| | ||||||||| |||||||||| |||| ||| |||||| ||||| |||| ||||| |||| ||| |
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| T |
33648667 |
ttccgagcttccttctgctagctcagttgccatggaaccttct---gccttctctggttggggctctcctgatggaaaattagactggtccatccgcggc |
33648763 |
T |
|
| Q |
101 |
gataaactcaatgaaatgacgacatcttattctttcggctt |
141 |
Q |
| |
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|| |||||||| | |||| || |||| |||||||||||| |
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| T |
33648764 |
aatgaactcaataacatgaggaaatctatttctttcggctt |
33648804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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