View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5822_low_12 (Length: 360)

Name: NF5822_low_12
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5822_low_12
NF5822_low_12
[»] chr1 (3 HSPs)
chr1 (13-182)||(42628321-42628490)
chr1 (179-270)||(42627529-42627620)
chr1 (260-339)||(42625390-42625469)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 42628490 - 42628321
Alignment:
Q  13 aatatgaggatacgtgcaagttttgtcatgtgatgcttatttttagtaagatgcaaagacaaatgaattttcttctttcaatatcttcaaagcgtcgatg 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  42628490 aatatgaggatacgtacaagttttgtcatgtgatgcttatttttagtaagatgcaaaaacaaatgaattttcttctctcaatatcttcaaagcgtcgatg 42628391  T
Q  113 caccttattttttgagtaataaggtttgaatggtagttgataattcagcaaaccatggtgaatcaactaa 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42628390 caccttattttttgactaataaggtttgaatggtagttgataattcagcaaaccatggtgaatcaactaa 42628321  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 42627620 - 42627529
Alignment:
Q  179 ctaatttggaaacgaaattcaaggatcactatgaaactctttgtgcccattttcgcctttttggcaacgaaattaaaccagaaaacacgtaa 270  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  42627620 ctaatttggcaacgaaattcaaggatcactatgaaactctttgtgcccattttcgcctttttggcaaagaaattaaaccagaaaacatgtaa 42627529  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 42625469 - 42625390
Alignment:
Q  260 aaaacacgtaagaattcaaggagtcttgtccgattcaatttagtcgtattatttgctgatgtagttttgcttttcccgac 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  42625469 aaaacacgtaagaattcaaggagtcttgtccgattcaatttagtcgtattacttgctgatgtagttttacttttcccgac 42625390  T

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