View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5822_low_13 (Length: 338)

Name: NF5822_low_13
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5822_low_13
NF5822_low_13
[»] chr7 (3 HSPs)
chr7 (11-230)||(14743943-14744161)
chr7 (231-338)||(14744374-14744481)
chr7 (13-230)||(14737426-14737639)
[»] chr5 (3 HSPs)
chr5 (64-230)||(17583149-17583315)
chr5 (13-230)||(17589144-17589359)
chr5 (231-338)||(17582839-17582946)
[»] chr3 (4 HSPs)
chr3 (156-225)||(27521856-27521924)
chr3 (156-225)||(27522746-27522814)
chr3 (193-227)||(23688166-23688200)
chr3 (193-227)||(24060403-24060437)
[»] chr8 (3 HSPs)
chr8 (167-227)||(23237993-23238052)
chr8 (156-222)||(35066149-35066214)
chr8 (89-129)||(4438288-4438328)
[»] chr1 (1 HSPs)
chr1 (158-218)||(10057655-10057714)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 14743943 - 14744161
Alignment:
Q  11 gaacctgtgggacgctagttatgtataaaaggaatacgtggttttggggtgatttgtttacttccagttataccattgaaacaaattattttataagaat 110  Q
    |||||| ||||||||||||||||||||||||||||   |||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||    
T  14743943 gaacctatgggacgctagttatgtataaaaggaatggatggttttggggtgacttgtttactttccgttatacccttgaaacaaattattttataagaat 14744042  T
Q  111 gttgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgta 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14744043 gttgtattgttggtgtcatt-gttcaaaaagatttggccccttctaagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgta 14744141  T
Q  211 ggaattgagtttgttgattt 230  Q
    ||||||||||||||||||||    
T  14744142 ggaattgagtttgttgattt 14744161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 231 - 338
Target Start/End: Original strand, 14744374 - 14744481
Alignment:
Q  231 acacatttgaggagaggagtaacaagagcaaaagggtgctacatcgactttatatcatttattttttcgcccatgttttcctcaaaaagtttaatggcgg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  14744374 acacatttgaggagaggagtaacaagagcaaaagggtgctacatcgactttttatcatttattttttcgaccatgttttcctcaacaagtttaatggcgg 14744473  T
Q  331 agccaata 338  Q
    ||||||||    
T  14744474 agccaata 14744481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 14737426 - 14737639
Alignment:
Q  13 acctgtgggacgctagttatgtataaaaggaatacgtggttttggggtgatttgtttacttccagttataccattgaaacaaattattttataagaatgt 112  Q
    ||||||||||| |||||||| |||||| | |||| || |||||| | ||| ||||| |||| |||||||||||||||||||||||  | ||||| |||||    
T  14737426 acctgtgggacactagttatatataaaggaaatatgttgttttgag-tgacttgttcacttacagttataccattgaaacaaatttgtctataataatgt 14737524  T
Q  113 tgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtagg 212  Q
    | ||||||||||||||| |||||  || ||||||||||| |||||||||| |   |||||||||| || |||||||||| ||||||||||||||||||||    
T  14737525 tttattgttggtgtcatacgttc--aacgatttggccccctctaagaaaaggctctgctcaacca-ccattgggttcacctttggatcgagtgttgtagg 14737621  T
Q  213 aattgagtttgttgattt 230  Q
     |||||||||||||||||    
T  14737622 gattgagtttgttgattt 14737639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 17583315 - 17583149
Alignment:
Q  64 ttgtttacttccagttataccattgaaacaaattattttataagaatgttgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaat 163  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17583315 ttgtttacttccagttatacccttgaaacaaattattttataagaatgttgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaat 17583216  T
Q  164 gtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattgagtttgttgattt 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  17583215 gtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtgggaattgagttggttgattt 17583149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 17589359 - 17589144
Alignment:
Q  13 acctgtgggacgctagttatgtataaaaggaatacgtggttttggggtgatttgtttacttccagttataccattgaaacaaattattttataagaatgt 112  Q
    ||||||||||| |||||||| |||||| | |||| || |||||| | ||| ||||| |||| |||||||||||||||||||||||  | ||||| |||||    
T  17589359 acctgtgggacactagttatatataaaggaaatatgttgttttgag-tgacttgttcactttcagttataccattgaaacaaatttgtctataacaatgt 17589261  T
Q  113 tgtattgttggtgtcattcgttcaaaaagatttggccccttctaagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtagg 212  Q
    | ||||||||||||||| ||||||||| ||||||||||| |||||||||| |   |||||||||| || |||||||||| ||||||||||||||||||||    
T  17589260 tttattgttggtgtcatacgttcaaaacgatttggccccctctaagaaaaggctctgctcaacca-ccattgggttcacctttggatcgagtgttgtagg 17589162  T
Q  213 aattgagtttgttgattt 230  Q
     |||||||||||||||||    
T  17589161 gattgagtttgttgattt 17589144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 231 - 338
Target Start/End: Complemental strand, 17582946 - 17582839
Alignment:
Q  231 acacatttgaggagaggagtaacaagagcaaaagggtgctacatcgactttatatcatttattttttcgcccatgttttcctcaaaaagtttaatggcgg 330  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  17582946 acacatttgaggagaggagtaataagagcaaaagggcgctacatcgactttttatcatttattttttcgaccatgttttcctcaacaagtttaatggcgg 17582847  T
Q  331 agccaata 338  Q
    ||||||||    
T  17582846 agccaata 17582839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 27521924 - 27521856
Alignment:
Q  156 aagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattgagtttgtt 225  Q
    ||||||| || |||||||||| || |||||||| |  |||||||||||||||||||||||||||||||||    
T  27521924 aagaaaaggtgttgctcaaccgcc-tttgggtttatctttggatcgagtgttgtaggaattgagtttgtt 27521856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 27522814 - 27522746
Alignment:
Q  156 aagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattgagtttgtt 225  Q
    ||||||| || |||||||||| || |||||||| |  |||||||||||||||||||||||||||||||||    
T  27522814 aagaaaaggtgttgctcaaccgcc-tttgggtttatctttggatcgagtgttgtaggaattgagtttgtt 27522746  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 23688200 - 23688166
Alignment:
Q  193 tttggatcgagtgttgtaggaattgagtttgttga 227  Q
    |||||||||||||||||||||||||| ||||||||    
T  23688200 tttggatcgagtgttgtaggaattgaatttgttga 23688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 24060437 - 24060403
Alignment:
Q  193 tttggatcgagtgttgtaggaattgagtttgttga 227  Q
    |||||||||||||||||||||||||| ||||||||    
T  24060437 tttggatcgagtgttgtaggaattgaatttgttga 24060403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 23238052 - 23237993
Alignment:
Q  167 ttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattgagtttgttga 227  Q
    |||||||||||||| ||| |||||||||| |||| |||||||||| |||||| ||||||||    
T  23238052 ttgctcaaccaccc-ttgtgttcacgtttagatctagtgttgtagtaattgaatttgttga 23237993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 35066149 - 35066214
Alignment:
Q  156 aagaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattgagttt 222  Q
    ||||||| || ||||||||||  |||| |||||||   |||||||||||||||||||||||||||||    
T  35066149 aagaaaaggtgttgctcaaccgtcctt-gggttcattcttggatcgagtgttgtaggaattgagttt 35066214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 4438288 - 4438328
Alignment:
Q  89 aaacaaattattttataagaatgttgtattgttggtgtcat 129  Q
    ||||||||| |||||||| |||||| |||||||||||||||    
T  4438288 aaacaaatttttttataataatgttatattgttggtgtcat 4438328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 10057655 - 10057714
Alignment:
Q  158 gaaaatgtcttgctcaaccaccctttgggttcacgtttggatcgagtgttgtaggaattga 218  Q
    ||||| || ||||||||||||| ||||||||||| |||| | |||||||| ||||||||||    
T  10057655 gaaaaagtgttgctcaaccacc-tttgggttcacctttgaaacgagtgttataggaattga 10057714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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