View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_low_14 (Length: 327)
Name: NF5822_low_14
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_low_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 77 - 327
Target Start/End: Complemental strand, 29893229 - 29892979
Alignment:
| Q |
77 |
ataaggtacaattgaaataagtttcctcttaaattatcatagttcatcacaatgtcatcaaattttctcaaattagaagagatgtgtgacccaagtcgac |
176 |
Q |
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| T |
29893229 |
ataaggtacaattgaaataagtttcctcttaaattatcatagttcattacaatatcatcaaattttctcaaattagaagagatgtgtgacccaagtcgac |
29893130 |
T |
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| Q |
177 |
taaccttgttttgtagggtagtcatttcttatttaaattttactaattgtgtttcttgtatagggatttaagagtttggacttctttcacttgtcttcct |
276 |
Q |
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| T |
29893129 |
taaccttgttttgtagggtagtcatttcttatttaaattttactaattgtgtttcttgtatagggatttaagagtttggacttctttcacttgtcttcct |
29893030 |
T |
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| Q |
277 |
ttaacttctcttcaacatattggcatgaggtgatagtcatattttcaggtg |
327 |
Q |
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| T |
29893029 |
ttaacttctcttcaacatattggcatgaggtgatagtcatattttcaggtg |
29892979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 77 - 327
Target Start/End: Complemental strand, 29887856 - 29887606
Alignment:
| Q |
77 |
ataaggtacaattgaaataagtttcctcttaaattatcatagttcatcacaatgtcatcaaattttctcaaattagaagagatgtgtgacccaagtcgac |
176 |
Q |
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| T |
29887856 |
ataaggtacaattgaaataagtttcctcttaaattatcatagttcatcacaatgccatcaaattttctcatattagaagagatatgtgacccaactcgac |
29887757 |
T |
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| Q |
177 |
taaccttgttttgtagggtagtcatttcttatttaaattttactaattgtgtttcttgtatagggatttaagagtttggacttctttcacttgtcttcct |
276 |
Q |
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| T |
29887756 |
tcaccttgttttgtagggtagtcatttcttatttaaattttactaattgtatttcttgtatagggattcaagagtttggacttctttcacttgtcttcct |
29887657 |
T |
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| Q |
277 |
ttaacttctcttcaacatattggcatgaggtgatagtcatattttcaggtg |
327 |
Q |
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| T |
29887656 |
ttaacttctcttcaacatattggcatgaggtgatagtcatattttcaggtg |
29887606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29887998 - 29887942
Alignment:
| Q |
20 |
taaatgattaagaagaaacatatatgaacgttggtttgattcaataattctaatcac |
76 |
Q |
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| T |
29887998 |
taaaggattaagaagaaacatatatgaatgttggtttgattcaataattctaatcac |
29887942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 29894010 - 29893968
Alignment:
| Q |
11 |
cagagacaataaatgattaagaagaaacatatatgaacgttgg |
53 |
Q |
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| T |
29894010 |
cagagacaataaaggattaagaagaaacatatatgaacgttgg |
29893968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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