View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_low_2 (Length: 571)
Name: NF5822_low_2
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 47 - 562
Target Start/End: Original strand, 26008936 - 26009450
Alignment:
| Q |
47 |
gacattattggaccgaatagtctttgaattgtgcatttccataaggagaagttcatcctcctattaaacaatgaaatattcaacttcataaagtagccaa |
146 |
Q |
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| T |
26008936 |
gacattgttggaccaaataatttttga-ttgtgcatttctataaggagaagttcatcctcccattaaacaatgaaatattcaacttcataaagtagccaa |
26009034 |
T |
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| Q |
147 |
aacattatataagaaaattacaaataagatgatagctaacatctcttcaaatgactagtgtagcaaactactcttctcttcacacaagaagcaaaaggaa |
246 |
Q |
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| T |
26009035 |
aacattatataagaaaattacaaataagatgatagctaacatctcttcaaattactagtgtagcaaactactcttctattcacacaagaagcaaaaggaa |
26009134 |
T |
|
| Q |
247 |
gcataaaaaacaatttacaaaacaataaaatattttattgctctcaacttgcaattaattacaaggataaaattgcaaatcctctcaattataatttttg |
346 |
Q |
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| T |
26009135 |
acataaaaaacaatttacaaaacaataaaatattgtattgctctcaacttgcaattaattacaaggataaaattgcaaatcctctcaattataatttttg |
26009234 |
T |
|
| Q |
347 |
catgtgaacattaaaaattgcaaacttactcaaagacattgaaatacccaatcaatgtacacccctatgccttagttgttgtggtggtgaagaaaattca |
446 |
Q |
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| T |
26009235 |
catgtgaacattaaaaattgcaaacttactcaaagacattgaaatacccaatcaatgtacacccctatgccttagttgttgtggtggtgaagaaaattca |
26009334 |
T |
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| Q |
447 |
tactaactctccatattatgtttatttataataactctatctcttattttgttgtatttatgcaccnnnnnnnnnnacaagaaactaaaataattgtctg |
546 |
Q |
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| T |
26009335 |
tactaactctccatattatgtttatttataataactctatctcttattttgttgtgtttatgcactttttttttttacaagaaactaaaataattgtctg |
26009434 |
T |
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| Q |
547 |
atggatgtacctttga |
562 |
Q |
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| T |
26009435 |
atggatgtacctttga |
26009450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 10438409 - 10438520
Alignment:
| Q |
72 |
gaattgtgcatttccataaggagaagttcatcctcctattaaacaatgaaatattcaacttcataaagtagccaaaacattatataagaaaattacaaat |
171 |
Q |
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| T |
10438409 |
gaattgtgcattggtataaggagaggatcatcctcctatcaaacaaaggaatatccaacttc--aaagtagccataacattatctaa-aaaaacacaaat |
10438505 |
T |
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| Q |
172 |
aagatgatagctaac |
186 |
Q |
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| T |
10438506 |
aagttgataactaac |
10438520 |
T |
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