View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5822_low_23 (Length: 247)

Name: NF5822_low_23
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5822_low_23
NF5822_low_23
[»] chr7 (2 HSPs)
chr7 (20-235)||(22384201-22384416)
chr7 (30-111)||(9699286-9699367)
[»] scaffold0010 (1 HSPs)
scaffold0010 (29-92)||(235743-235806)
[»] chr3 (2 HSPs)
chr3 (29-99)||(25226616-25226686)
chr3 (22-82)||(25231830-25231890)
[»] chr4 (3 HSPs)
chr4 (21-104)||(9003196-9003279)
chr4 (23-92)||(27655874-27655943)
chr4 (30-111)||(13565663-13565744)
[»] chr8 (1 HSPs)
chr8 (26-93)||(16054797-16054864)
[»] chr5 (3 HSPs)
chr5 (36-103)||(16988327-16988394)
chr5 (32-88)||(15023592-15023648)
chr5 (36-72)||(27810039-27810075)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 22384201 - 22384416
Alignment:
Q  20 tattagaaccacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgtacaataatcttctggttcaannnnnnn 119  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||           
T  22384201 tattagaaccacttgattcacattttaaagactcatactcatgttctttttgcacaatgtcaactgaaaatgtacaataatcttccgattcaattttttc 22384300  T
Q  120 ccttgtgtatattttgttaaannnnnnnattggggcaccatcccattttcgggttacaatattatatatacaaagttttcacatgtactttttgatgaca 219  Q
    |||| | ||||||||||||||       ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  22384301 ccttttatatattttgttaaatttttttattggggcaccgtcccattttctggttacaatattatatatacaaagttttcacatgcactttatgatgaca 22384400  T
Q  220 aatcttcgtttgagaa 235  Q
    |||||||||| |||||    
T  22384401 aatcttcgttggagaa 22384416  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 9699286 - 9699367
Alignment:
Q  30 acttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgtacaataatcttctggttca 111  Q
    ||||| |||||||||||||||  || || | | ||||||||||||||| |||| ||||||| ||||  ||||||| ||||||    
T  9699286 acttggttcacatttcaaagatccacacccttgttctttttgcacaatatcaaatgaaaatatacataaatcttccggttca 9699367  T

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Target: scaffold0010 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 235743 - 235806
Alignment:
Q  29 cacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgt 92  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  235743 cacttgattcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaaatgt 235806  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 25226686 - 25226616
Alignment:
Q  29 cacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgtacaataa 99  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||| ||||||    
T  25226686 cacttgattcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaaatgtgcaataa 25226616  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 25231890 - 25231830
Alignment:
Q  22 ttagaaccacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaa 82  Q
    |||| ||||||||||| ||||||||||||  || |||||| |||||||| |||||| ||||    
T  25231890 ttagcaccacttgatttacatttcaaagatccacactcatgttctttttacacaatatcaa 25231830  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 9003279 - 9003196
Alignment:
Q  21 attagaaccacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgtacaataatcttc 104  Q
    |||||||||||||||||||||||||||||| | |||||||| || |||||| ||||| |||| | |||||||| ||||||||||    
T  9003279 attagaaccacttgattcacatttcaaagatttatactcatgttatttttggacaatatcaaataaaaatgtataataatcttc 9003196  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 27655874 - 27655943
Alignment:
Q  23 tagaaccacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgt 92  Q
    |||| ||||||| |||||||||||||||  ||||||||| || ||||||| ||||||||| |||| ||||    
T  27655874 tagagccacttggttcacatttcaaagatccatactcatgttttttttgctcaatgtcaaatgaagatgt 27655943  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 13565663 - 13565744
Alignment:
Q  30 acttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgtacaataatcttctggttca 111  Q
    ||||| |||||||||||||||  || || | | ||||||||||||||| |||| ||||||| ||||  ||||||| ||||||    
T  13565663 acttggttcacatttcaaagatccacacccttgttctttttgcacaatatcaaatgaaaatatacataaatcttccggttca 13565744  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 16054797 - 16054864
Alignment:
Q  26 aaccacttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgta 93  Q
    ||||||||| |||||||||||||||  ||||||| | ||||||||||||||| |||| ||||||||||    
T  16054797 aaccacttggttcacatttcaaagatccatactcgtgttctttttgcacaatctcaaatgaaaatgta 16054864  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 16988394 - 16988327
Alignment:
Q  36 ttcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaaatgtacaataatctt 103  Q
    |||||||||||||||  ||||||| | ||||||||||||||  |||| ||||||||| ||||||||||    
T  16988394 ttcacatttcaaagatccatactcgtgttctttttgcacaacatcaaatgaaaatgtgcaataatctt 16988327  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 15023592 - 15023648
Alignment:
Q  32 ttgattcacatttcaaagactcatactcatattctttttgcacaatgtcaactgaaa 88  Q
    ||||||||||||||||| | |||||||  | ||||||||| |||||||||| |||||    
T  15023592 ttgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaa 15023648  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 27810075 - 27810039
Alignment:
Q  36 ttcacatttcaaagactcatactcatattctttttgc 72  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  27810075 ttcacatttcaaagattcatactcatattatttttgc 27810039  T

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