View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_low_3 (Length: 569)
Name: NF5822_low_3
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 207 - 552
Target Start/End: Complemental strand, 985688 - 985343
Alignment:
| Q |
207 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
306 |
Q |
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| T |
985688 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
985589 |
T |
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| Q |
307 |
gnnnnnnnagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttcccctcttatcacctcccattt |
406 |
Q |
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| T |
985588 |
gttttgttagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttaccctcttatcacctcccattt |
985489 |
T |
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| Q |
407 |
cctcaaaacttgtttgctttagtgctcacaacaatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
506 |
Q |
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| T |
985488 |
cctcaaaacttgtatgctttagtgctcacaaccatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
985389 |
T |
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| Q |
507 |
tcattttatattatacactagattttgaaattatggttgcactcac |
552 |
Q |
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| T |
985388 |
tcattttatattatacactagattttgaaattatggttgcactcac |
985343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 985902 - 985692
Alignment:
| Q |
21 |
tcatctaaagcatatatgcaatttccctaccataatttatgtcgtggaccagttttgatgaatttagatgacatagtaattggcccacctagcttataga |
120 |
Q |
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| T |
985902 |
tcatctaaagcatatatgcaatttccctaccataatttatgtcgtggaccatttttgatgaatttagatgacatagtaattggcccacctagcttataga |
985803 |
T |
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| Q |
121 |
agttattattcaaacttaccgtctgttctatgacataatggttgcaggttgcttgcatatgtacctgcattacatatcaggcaacttaatttagttgtac |
220 |
Q |
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| T |
985802 |
agttattattcaaacttaccgtctgttctatgacataatggttgcaggttgcttgcatatgtacctgcattacatatcaggcaacttaatttagttgtac |
985703 |
T |
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| Q |
221 |
aaatgtagttg |
231 |
Q |
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| T |
985702 |
aaatgtagttg |
985692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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