View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5822_low_9 (Length: 404)
Name: NF5822_low_9
Description: NF5822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5822_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 19857873 - 19857595
Alignment:
| Q |
1 |
gtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagcttt-- |
98 |
Q |
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| T |
19857873 |
gtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttct |
19857774 |
T |
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| Q |
99 |
-------------------tggttgaagttggtcaacccacttaacccattgtgtgcgtgggttaccaaattcttaaaacaaacaaaccatatttggatg |
179 |
Q |
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| T |
19857773 |
tccacacagattcatattttggttgaagttggtcaacccacttaacccattgtgtgcgtgggttaccaaattcttaaaacaaacaaaccatatttggatg |
19857674 |
T |
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| Q |
180 |
ctttcagacatatattaattgctaatttgatatggattatttataatgtaaaggaagtataatgtaataagcaattgat |
258 |
Q |
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| T |
19857673 |
ctttcagacatatattaattgctaatttgatatggattatttataatgtaaaggaagtataatgtaataagcaattgat |
19857595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 19857537 - 19857478
Alignment:
| Q |
334 |
tacatatacatgtcctatttttagaatgtgcattatttaagtgacttaaaatgttagtat |
393 |
Q |
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| T |
19857537 |
tacatatacatgtcctatttttagaatgtgcattatttaagtgacttaaaatgttagtat |
19857478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19853315 - 19853230
Alignment:
| Q |
1 |
gtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa |
86 |
Q |
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| T |
19853315 |
gtctcagaacaccatttgtcaacaaccccacataacaagttttgatctttctttatgcagctcttagtactcataatagcatcaaa |
19853230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19818360 - 19818275
Alignment:
| Q |
1 |
gtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa |
86 |
Q |
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| T |
19818360 |
gtctcacaacaccatttctcaacaaccccaaatagcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaa |
19818275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19989325 - 19989240
Alignment:
| Q |
1 |
gtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa |
86 |
Q |
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| T |
19989325 |
gtctcacaacaccatttctcaacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaa |
19989240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 9814833 - 9814755
Alignment:
| Q |
8 |
aacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaa |
86 |
Q |
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|||||||||| |||||||||||||| | ||||||| ||||||||||||||||||| || |||||| | ||||||||||| |
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| T |
9814833 |
aacaccatttctcaacaaccccatatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaa |
9814755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26355242 - 26355339
Alignment:
| Q |
1 |
gtctcagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagcttt |
98 |
Q |
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|||||| |||||||||| || |||||||| |||| ||||||| ||| ||||| |||||||||||| |||||| | |||||||||||||| ||||||| |
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| T |
26355242 |
gtctcacaacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagcttt |
26355339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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