View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5823-Insertion-1 (Length: 856)
Name: NF5823-Insertion-1
Description: NF5823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5823-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 365 - 856
Target Start/End: Complemental strand, 2412908 - 2412416
Alignment:
| Q |
365 |
ttaggggtctggattctcaaatgtagcataatcacacatttacacgtagtagacaattttggttgttacgtttacaagatcagacatctcagatcacaca |
464 |
Q |
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| T |
2412908 |
ttaggggtctggattctcaaatgtagcataatcacacatttacacgtagtagacaattttggttgttacgtttacaagatcagacatctcagatcacaca |
2412809 |
T |
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| Q |
465 |
ttcacaaaataaattttaaacatacggtcgaaatcactaactgtgtgacacagtttttggaggcaacctatttcttaccattagagagaattgatgtgat |
564 |
Q |
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| T |
2412808 |
ttcacaaaataaattttaaacatacggtcgaaatcactaactgtgtgacacagtttttggaggcaacctatttcttactattagagagaattgatgtgat |
2412709 |
T |
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| Q |
565 |
tctactagtgctgttctaataggcattatttatcttcaggatgaactattgtggggagctgcatggctttttagagcaacaaatgctgctaaatactaca |
664 |
Q |
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| T |
2412708 |
tctactagtgctgttctaataggcattatttatcttcaggatgaactattgtggggagctgcatggctttttagagcaacaaatgctgttaaatactaca |
2412609 |
T |
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| Q |
665 |
atttggttaagtctttgggagctgatgatcaacctgatatcttcagctgggataacaagtatgctggtgcacatgtccttctctcaagggtaagttggat |
764 |
Q |
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| T |
2412608 |
atttggttaagtctttgggagctgatgatcaacctgatatcttcagctgggataacaaatatgctggtgcacatgtccttctctcaagggtaagttggat |
2412509 |
T |
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| Q |
765 |
ttcattg-aaatgtgaataaccaatttgtttctctaaactttgctgattcattagttttctattgttactgcagagagcattgttgaatggtg |
856 |
Q |
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| T |
2412508 |
ttcattgaaaatgtgaataaccaatttgtttgtctaaactttgctgattcattagttttctattgttactgcagagagcattgttgaatggtg |
2412416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 2413363 - 2413009
Alignment:
| Q |
9 |
agattatctcctcaaatgtgcaacatcaacacctggaagactctatgttggtgttggagatccaaatgttgatcacaaatgttgggaaagaccagaagat |
108 |
Q |
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| T |
2413363 |
agattatctcctcaaatgtgcaacatcaacacctggaagactctatgttggtgttggagatccaaatgttgatcacaaatgttgggaaagaccagaagat |
2413264 |
T |
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| Q |
109 |
atggacactgttagaactgtttattacgtatcttcaaagaatcctggttctgatgttgccgctgaaaccgctgctgcacttgctgcggcgtctattgttt |
208 |
Q |
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| T |
2413263 |
atggacactgttagaactgtttatttcgtatcttcaaagaatcccggttctgatgttgccgctgaaaccgctgctgcacttgctgcggcgtctattgttt |
2413164 |
T |
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| Q |
209 |
ttagaaaagttgatccaacttattctaagcttttgttgaggactgcacaaaaggtttatcagtttgctttgcagtatcaaggttcatacagtgattcact |
308 |
Q |
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| T |
2413163 |
ttagaaaagttgatccaacttattctaagcttttgttgaggactgcacaaaaggtttatcagtttgctttgcagtatcaaggttcatacagtgattcact |
2413064 |
T |
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| Q |
309 |
tggttcagctgtttgtccattttattgctcatattctggattcaaggtaaaattt |
363 |
Q |
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| T |
2413063 |
tggttcagctgtttgtccattttattgctcatattctggattcaaggtaaaattt |
2413009 |
T |
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